Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.99■□□□□ 0.79
SEMA3DO95025 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.99■□□□□ 0.79
SEMA3DO95025 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEMA3DO95025 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.99■□□□□ 0.79
SEMA3DO95025 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEMA3DO95025 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SEMA3DO95025 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SEMA3DO95025 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.98■□□□□ 0.79
SEMA3DO95025 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SEMA3DO95025 POU5F1P4-201ENST00000413175 1085 ntBASIC19.98■□□□□ 0.79
SEMA3DO95025 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.98■□□□□ 0.79
SEMA3DO95025 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.98■□□□□ 0.79
SEMA3DO95025 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.98■□□□□ 0.79
SEMA3DO95025 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.98■□□□□ 0.79
SEMA3DO95025 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.98■□□□□ 0.79
SEMA3DO95025 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.98■□□□□ 0.79
SEMA3DO95025 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.98■□□□□ 0.79
SEMA3DO95025 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SEMA3DO95025 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.98■□□□□ 0.79
SEMA3DO95025 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SEMA3DO95025 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.98■□□□□ 0.79
SEMA3DO95025 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
SEMA3DO95025 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.97■□□□□ 0.79
SEMA3DO95025 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.97■□□□□ 0.79
SEMA3DO95025 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.97■□□□□ 0.79
SEMA3DO95025 CCDC92B-201ENST00000575506 885 ntBASIC19.97■□□□□ 0.79
SEMA3DO95025 AC008175.2-201ENST00000612840 297 ntBASIC19.97■□□□□ 0.79
SEMA3DO95025 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SEMA3DO95025 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.97■□□□□ 0.79
SEMA3DO95025 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SEMA3DO95025 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SEMA3DO95025 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
SEMA3DO95025 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEMA3DO95025 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEMA3DO95025 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEMA3DO95025 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SEMA3DO95025 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SEMA3DO95025 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.96■□□□□ 0.79
SEMA3DO95025 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.96■□□□□ 0.79
SEMA3DO95025 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SEMA3DO95025 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.96■□□□□ 0.79
SEMA3DO95025 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.96■□□□□ 0.79
SEMA3DO95025 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.96■□□□□ 0.79
SEMA3DO95025 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.96■□□□□ 0.79
SEMA3DO95025 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SEMA3DO95025 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SEMA3DO95025 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SEMA3DO95025 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SEMA3DO95025 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEMA3DO95025 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
SEMA3DO95025 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEMA3DO95025 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.95■□□□□ 0.78
SEMA3DO95025 AP004607.4-201ENST00000530158 1459 ntBASIC19.95■□□□□ 0.78
SEMA3DO95025 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.95■□□□□ 0.78
SEMA3DO95025 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.95■□□□□ 0.78
SEMA3DO95025 AC010141.2-201ENST00000452426 721 ntBASIC19.95■□□□□ 0.78
SEMA3DO95025 KRT18P14-201ENST00000534205 1250 ntBASIC19.95■□□□□ 0.78
SEMA3DO95025 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.95■□□□□ 0.78
SEMA3DO95025 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SEMA3DO95025 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SEMA3DO95025 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SEMA3DO95025 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.95■□□□□ 0.78
SEMA3DO95025 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SEMA3DO95025 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEMA3DO95025 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SEMA3DO95025 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEMA3DO95025 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SEMA3DO95025 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SEMA3DO95025 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SEMA3DO95025 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SEMA3DO95025 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.94■□□□□ 0.78
SEMA3DO95025 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEMA3DO95025 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.94■□□□□ 0.78
SEMA3DO95025 AC061975.6-201ENST00000579045 1553 ntBASIC19.94■□□□□ 0.78
SEMA3DO95025 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.94■□□□□ 0.78
SEMA3DO95025 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.94■□□□□ 0.78
SEMA3DO95025 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.94■□□□□ 0.78
SEMA3DO95025 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SEMA3DO95025 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SEMA3DO95025 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.93■□□□□ 0.78
SEMA3DO95025 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms