Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.29■■□□□ 1
TCRBV7S3A2A0A539 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 PKD1P6-201ENST00000343738 4769 ntBASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 AC091305.1-201ENST00000479476 895 ntBASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 SUDS3P1-201ENST00000505831 966 ntBASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TCRBV7S3A2A0A539 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TCRBV7S3A2A0A539 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.27■□□□□ 0.99
TCRBV7S3A2A0A539 AC121338.2-201ENST00000622535 1744 ntBASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 AC012414.1-201ENST00000556676 535 ntBASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TCRBV7S3A2A0A539 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 AP005212.1-201ENST00000581547 1997 ntBASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TCRBV7S3A2A0A539 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 EEF1DP3-203ENST00000566025 782 ntBASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.24■□□□□ 0.99
TCRBV7S3A2A0A539 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 TPRG1LP1-201ENST00000598702 760 ntBASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 AC061975.6-201ENST00000579045 1553 ntBASIC21.23■□□□□ 0.99
TCRBV7S3A2A0A539 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TCRBV7S3A2A0A539 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms