Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
SMIM28A0A1B0GU29 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.52■■□□□ 1.19
SMIM28A0A1B0GU29 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 RARRES2P4-201ENST00000514074 484 ntBASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 MKRN4P-201ENST00000444706 1521 ntBASIC22.51■■□□□ 1.19
SMIM28A0A1B0GU29 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SMIM28A0A1B0GU29 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 PHB2-213ENST00000546111 858 ntTSL 2 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
SMIM28A0A1B0GU29 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 MIPEPP3-201ENST00000412105 444 ntBASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SMIM28A0A1B0GU29 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 AC010980.2-201ENST00000587099 1412 ntBASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.47■■□□□ 1.19
SMIM28A0A1B0GU29 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 AC073210.2-201ENST00000430369 194 ntBASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 AC069152.1-201ENST00000438030 544 ntBASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 AC098934.4-201ENST00000564127 592 ntBASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SMIM28A0A1B0GU29 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 AC133041.1-202ENST00000642053 222 ntBASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.45■■□□□ 1.18
SMIM28A0A1B0GU29 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms