Protein–RNA interactions for Protein: Q9Y5Y9

SCN10A, Sodium channel protein type 10 subunit alpha, humanhuman

Predictions only

Length 1,956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10AQ9Y5Y9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 AC073648.6-201ENST00000641589 218 ntBASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 AC010542.4-201ENST00000563151 1910 ntBASIC23.18■■□□□ 1.3
SCN10AQ9Y5Y9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 AC068473.5-201ENST00000616428 2072 ntBASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 MCRIP2P1-201ENST00000394346 511 ntBASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.17■■□□□ 1.3
SCN10AQ9Y5Y9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 CDV3P1-201ENST00000471403 739 ntBASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 UNC93B4-201ENST00000505679 747 ntBASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 PNMA6B-201ENST00000538162 1200 ntBASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SCN10AQ9Y5Y9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 FAM99A-202ENST00000538190 1989 ntBASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SCN10AQ9Y5Y9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 AP006294.2-201ENST00000641667 209 ntBASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SCN10AQ9Y5Y9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 AL596275.1-201ENST00000423464 877 ntBASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
SCN10AQ9Y5Y9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SCN10AQ9Y5Y9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SCN10AQ9Y5Y9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms