Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA2Q9Y261 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 AK1-201ENST00000223836 736 ntTSL 3 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
FOXA2Q9Y261 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA2Q9Y261 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
FOXA2Q9Y261 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
FOXA2Q9Y261 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
FOXA2Q9Y261 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXA2Q9Y261 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 AL157384.1-201ENST00000445995 2473 ntBASIC16.88■□□□□ 0.29
FOXA2Q9Y261 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 AC073130.3-201ENST00000624389 2278 ntBASIC16.88■□□□□ 0.29
FOXA2Q9Y261 BX005040.4-201ENST00000637145 1518 ntBASIC16.88■□□□□ 0.29
FOXA2Q9Y261 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 NT5C3AP1-201ENST00000394500 1012 ntBASIC16.88■□□□□ 0.29
FOXA2Q9Y261 MIR6084-201ENST00000622012 110 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms