Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.17■■□□□ 1.3
NOD1Q9Y239 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NOD1Q9Y239 UNC93B5-201ENST00000530315 699 ntBASIC23.17■■□□□ 1.3
NOD1Q9Y239 AP003097.1-201ENST00000530657 1135 ntBASIC23.17■■□□□ 1.3
NOD1Q9Y239 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.17■■□□□ 1.3
NOD1Q9Y239 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NOD1Q9Y239 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NOD1Q9Y239 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
NOD1Q9Y239 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
NOD1Q9Y239 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
NOD1Q9Y239 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
NOD1Q9Y239 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NOD1Q9Y239 AL355472.2-201ENST00000422958 438 ntBASIC23.16■■□□□ 1.3
NOD1Q9Y239 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.16■■□□□ 1.3
NOD1Q9Y239 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NOD1Q9Y239 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NOD1Q9Y239 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
NOD1Q9Y239 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NOD1Q9Y239 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.15■■□□□ 1.3
NOD1Q9Y239 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NOD1Q9Y239 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
NOD1Q9Y239 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NOD1Q9Y239 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NOD1Q9Y239 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NOD1Q9Y239 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NOD1Q9Y239 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NOD1Q9Y239 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NOD1Q9Y239 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NOD1Q9Y239 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NOD1Q9Y239 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.14■■□□□ 1.3
NOD1Q9Y239 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NOD1Q9Y239 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.14■■□□□ 1.29
NOD1Q9Y239 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.14■■□□□ 1.29
NOD1Q9Y239 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.14■■□□□ 1.29
NOD1Q9Y239 FAM21FP-204ENST00000608637 956 ntBASIC23.14■■□□□ 1.29
NOD1Q9Y239 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NOD1Q9Y239 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
NOD1Q9Y239 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.14■■□□□ 1.29
NOD1Q9Y239 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.14■■□□□ 1.29
NOD1Q9Y239 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 KRT17P1-201ENST00000399211 1546 ntBASIC23.13■■□□□ 1.29
NOD1Q9Y239 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 AC073648.6-201ENST00000641589 218 ntBASIC23.13■■□□□ 1.29
NOD1Q9Y239 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NOD1Q9Y239 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.13■■□□□ 1.29
NOD1Q9Y239 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 AC092053.2-201ENST00000640557 1818 ntBASIC23.12■■□□□ 1.29
NOD1Q9Y239 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
NOD1Q9Y239 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NOD1Q9Y239 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NOD1Q9Y239 RPS2P4-201ENST00000476944 856 ntBASIC23.12■■□□□ 1.29
NOD1Q9Y239 UNC93B4-201ENST00000505679 747 ntBASIC23.12■■□□□ 1.29
NOD1Q9Y239 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NOD1Q9Y239 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.12■■□□□ 1.29
NOD1Q9Y239 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NOD1Q9Y239 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NOD1Q9Y239 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NOD1Q9Y239 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NOD1Q9Y239 AC093323.1-202ENST00000635031 2045 ntBASIC23.11■■□□□ 1.29
NOD1Q9Y239 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.11■■□□□ 1.29
NOD1Q9Y239 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NOD1Q9Y239 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms