Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 AC026471.6-201ENST00000622954 1905 ntBASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC40.08■■■■■ 4.01
SHROOM4Q9ULL8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC40.07■■■■■ 4.01
SHROOM4Q9ULL8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC40.07■■■■■ 4.01
SHROOM4Q9ULL8 AC053503.5-201ENST00000601508 636 ntBASIC40.07■■■■■ 4.01
SHROOM4Q9ULL8 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC40.07■■■■■ 4.01
SHROOM4Q9ULL8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC40.07■■■■■ 4
SHROOM4Q9ULL8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC40.07■■■■■ 4
SHROOM4Q9ULL8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC40.07■■■■■ 4
SHROOM4Q9ULL8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC40.07■■■■■ 4
SHROOM4Q9ULL8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC40.07■■■■■ 4
SHROOM4Q9ULL8 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC40.07■■■■■ 4
SHROOM4Q9ULL8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC40.06■■■■■ 4
SHROOM4Q9ULL8 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC40.06■■■■■ 4
SHROOM4Q9ULL8 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC40.06■■■■■ 4
SHROOM4Q9ULL8 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC40.06■■■■■ 4
SHROOM4Q9ULL8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC40.06■■■■■ 4
SHROOM4Q9ULL8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC40.05■■■■■ 4
SHROOM4Q9ULL8 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC40.05■■■■■ 4
SHROOM4Q9ULL8 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC40.05■■■■■ 4
SHROOM4Q9ULL8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 AC060766.5-201ENST00000590539 871 ntBASIC40.04■■■■■ 4
SHROOM4Q9ULL8 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC40.04■■■■■ 4
SHROOM4Q9ULL8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC40.03■■■■■ 4
SHROOM4Q9ULL8 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 SERPINH1P1-201ENST00000419794 1249 ntBASIC40.02■■■■■ 4
SHROOM4Q9ULL8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC40.02■■■■■ 4
SHROOM4Q9ULL8 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC40.01■■■■■ 4
SHROOM4Q9ULL8 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC40■■■■□ 3.99
SHROOM4Q9ULL8 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC39.99■■■■□ 3.99
SHROOM4Q9ULL8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC39.99■■■■□ 3.99
SHROOM4Q9ULL8 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC39.99■■■■□ 3.99
SHROOM4Q9ULL8 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC39.98■■■■□ 3.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms