Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 AC138907.5-202ENST00000569484 235 ntBASIC20.93■□□□□ 0.94
TREX1Q9NSU2 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TREX1Q9NSU2 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 AP004607.4-201ENST00000530158 1459 ntBASIC20.92■□□□□ 0.94
TREX1Q9NSU2 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 PLK5-205ENST00000642079 1969 ntBASIC20.92■□□□□ 0.94
TREX1Q9NSU2 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.92■□□□□ 0.94
TREX1Q9NSU2 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.91■□□□□ 0.94
TREX1Q9NSU2 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 POU5F1P4-201ENST00000413175 1085 ntBASIC20.9■□□□□ 0.94
TREX1Q9NSU2 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TREX1Q9NSU2 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TREX1Q9NSU2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TREX1Q9NSU2 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
TREX1Q9NSU2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TREX1Q9NSU2 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 CCDC92B-201ENST00000575506 885 ntBASIC20.89■□□□□ 0.93
TREX1Q9NSU2 AC008175.2-201ENST00000612840 297 ntBASIC20.89■□□□□ 0.93
TREX1Q9NSU2 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.89■□□□□ 0.93
TREX1Q9NSU2 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 AC010141.2-201ENST00000452426 721 ntBASIC20.88■□□□□ 0.93
TREX1Q9NSU2 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 AC006128.1-201ENST00000624704 1661 ntBASIC20.88■□□□□ 0.93
TREX1Q9NSU2 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TREX1Q9NSU2 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TREX1Q9NSU2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.87■□□□□ 0.93
TREX1Q9NSU2 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.87■□□□□ 0.93
TREX1Q9NSU2 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms