Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 AC008175.2-201ENST00000612840 297 ntBASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 PKD1P6-201ENST00000343738 4769 ntBASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 AC005229.4-201ENST00000610085 2198 ntBASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.16■□□□□ 0.66
EXOSC3Q9NQT5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 KRT18P14-201ENST00000534205 1250 ntBASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 AP004607.4-201ENST00000530158 1459 ntBASIC19.15■□□□□ 0.66
EXOSC3Q9NQT5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
EXOSC3Q9NQT5 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.14■□□□□ 0.65
EXOSC3Q9NQT5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 AF106564.1-201ENST00000607058 2553 ntBASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 AC010141.2-201ENST00000452426 721 ntBASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC3Q9NQT5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L2-201ENST00000561772 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L6-201ENST00000626483 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L1-201ENST00000627662 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L8-201ENST00000629013 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L3-201ENST00000630187 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L7-201ENST00000630678 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DUX4L5-201ENST00000630834 1275 ntBASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC3Q9NQT5 AC061975.6-201ENST00000579045 1553 ntBASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
EXOSC3Q9NQT5 KRT16P2-201ENST00000414673 1423 ntBASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
EXOSC3Q9NQT5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms