Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 UNC93B4-201ENST00000505679 747 ntBASIC26.81■■□□□ 1.88
USP42Q9H9J4 AP003097.1-201ENST00000530657 1135 ntBASIC26.81■■□□□ 1.88
USP42Q9H9J4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USP42Q9H9J4 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
USP42Q9H9J4 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USP42Q9H9J4 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC26.8■■□□□ 1.88
USP42Q9H9J4 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
USP42Q9H9J4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USP42Q9H9J4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC26.8■■□□□ 1.88
USP42Q9H9J4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC26.8■■□□□ 1.88
USP42Q9H9J4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC26.8■■□□□ 1.88
USP42Q9H9J4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
USP42Q9H9J4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC26.8■■□□□ 1.88
USP42Q9H9J4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USP42Q9H9J4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.79■■□□□ 1.88
USP42Q9H9J4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USP42Q9H9J4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.79■■□□□ 1.88
USP42Q9H9J4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC26.79■■□□□ 1.88
USP42Q9H9J4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC26.79■■□□□ 1.88
USP42Q9H9J4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USP42Q9H9J4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
USP42Q9H9J4 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC26.78■■□□□ 1.88
USP42Q9H9J4 SERPINH1P1-201ENST00000419794 1249 ntBASIC26.78■■□□□ 1.88
USP42Q9H9J4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC26.78■■□□□ 1.88
USP42Q9H9J4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC26.78■■□□□ 1.88
USP42Q9H9J4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC26.78■■□□□ 1.88
USP42Q9H9J4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC26.78■■□□□ 1.88
USP42Q9H9J4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC26.78■■□□□ 1.88
USP42Q9H9J4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USP42Q9H9J4 AC137767.1-201ENST00000602918 1920 ntBASIC26.77■■□□□ 1.88
USP42Q9H9J4 GUSBP5-202ENST00000510805 1989 ntBASIC26.77■■□□□ 1.88
USP42Q9H9J4 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
USP42Q9H9J4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
USP42Q9H9J4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
USP42Q9H9J4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
USP42Q9H9J4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
USP42Q9H9J4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
USP42Q9H9J4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 USP36-216ENST00000589424 970 ntTSL 5 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 TERT-206ENST00000508104 2486 ntTSL 5 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.77■■□□□ 1.88
USP42Q9H9J4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.76■■□□□ 1.88
USP42Q9H9J4 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
USP42Q9H9J4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 CD44-222ENST00000526025 1052 ntTSL 2 BASIC26.76■■□□□ 1.87
USP42Q9H9J4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
USP42Q9H9J4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
USP42Q9H9J4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
USP42Q9H9J4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
USP42Q9H9J4 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
USP42Q9H9J4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC26.75■■□□□ 1.87
USP42Q9H9J4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC26.75■■□□□ 1.87
USP42Q9H9J4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP42Q9H9J4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
USP42Q9H9J4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
USP42Q9H9J4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 AC061975.6-201ENST00000579045 1553 ntBASIC26.74■■□□□ 1.87
USP42Q9H9J4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC26.74■■□□□ 1.87
USP42Q9H9J4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 AC139530.1-201ENST00000575312 1977 ntBASIC26.74■■□□□ 1.87
USP42Q9H9J4 AC080038.3-201ENST00000623346 1952 ntBASIC26.74■■□□□ 1.87
USP42Q9H9J4 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 AL117328.2-201ENST00000624617 1940 ntBASIC26.74■■□□□ 1.87
USP42Q9H9J4 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
USP42Q9H9J4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms