Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SCAPERQ9BY12 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SCAPERQ9BY12 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC31.88■■■□□ 2.69
SCAPERQ9BY12 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
SCAPERQ9BY12 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SCAPERQ9BY12 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SCAPERQ9BY12 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SCAPERQ9BY12 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC31.87■■■□□ 2.69
SCAPERQ9BY12 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC31.87■■■□□ 2.69
SCAPERQ9BY12 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SCAPERQ9BY12 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 AC012618.2-201ENST00000428058 849 ntBASIC31.86■■■□□ 2.69
SCAPERQ9BY12 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 OR2A1-AS1-207ENST00000486094 819 ntBASIC31.86■■■□□ 2.69
SCAPERQ9BY12 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 CBFB-203ENST00000561924 584 ntTSL 5 BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC31.86■■■□□ 2.69
SCAPERQ9BY12 AC087742.1-201ENST00000575880 1738 ntBASIC31.86■■■□□ 2.69
SCAPERQ9BY12 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 KRT18P21-201ENST00000515767 1272 ntBASIC31.85■■■□□ 2.69
SCAPERQ9BY12 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
SCAPERQ9BY12 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 CDV3P1-201ENST00000471403 739 ntBASIC31.84■■■□□ 2.69
SCAPERQ9BY12 REXO2-216ENST00000544196 452 ntTSL 3 BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
SCAPERQ9BY12 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 AC233702.5-201ENST00000584107 538 ntBASIC31.83■■■□□ 2.69
SCAPERQ9BY12 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC31.83■■■□□ 2.69
SCAPERQ9BY12 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
SCAPERQ9BY12 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 MFF-205ENST00000354503 1085 ntTSL 2 BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SCAPERQ9BY12 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 VMO1-204ENST00000441199 741 ntTSL 2 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 AC003102.1-202ENST00000563394 1796 ntBASIC31.81■■■□□ 2.68
SCAPERQ9BY12 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC31.81■■■□□ 2.68
SCAPERQ9BY12 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 GCK-205ENST00000437084 1385 ntTSL 5 BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 POM121L13P-201ENST00000422362 380 ntBASIC31.8■■■□□ 2.68
SCAPERQ9BY12 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SCAPERQ9BY12 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 TSPY7P-201ENST00000431358 1114 ntBASIC31.79■■■□□ 2.68
SCAPERQ9BY12 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 REXO2-208ENST00000539754 791 ntTSL 2 BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC31.79■■■□□ 2.68
SCAPERQ9BY12 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC31.79■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms