Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
CDX2Q99626 MCRIP2P1-201ENST00000394346 511 ntBASIC22.27■■□□□ 1.16
CDX2Q99626 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDX2Q99626 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC22.27■■□□□ 1.16
CDX2Q99626 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.27■■□□□ 1.16
CDX2Q99626 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.27■■□□□ 1.16
CDX2Q99626 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.27■■□□□ 1.16
CDX2Q99626 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDX2Q99626 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.27■■□□□ 1.16
CDX2Q99626 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.27■■□□□ 1.16
CDX2Q99626 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC22.27■■□□□ 1.16
CDX2Q99626 AL121894.2-201ENST00000602977 491 ntBASIC22.27■■□□□ 1.16
CDX2Q99626 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDX2Q99626 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
CDX2Q99626 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDX2Q99626 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDX2Q99626 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDX2Q99626 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.26■■□□□ 1.15
CDX2Q99626 KRASP1-201ENST00000407852 552 ntBASIC22.26■■□□□ 1.15
CDX2Q99626 NTF6B-201ENST00000591913 560 ntBASIC22.26■■□□□ 1.15
CDX2Q99626 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CDX2Q99626 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CDX2Q99626 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDX2Q99626 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDX2Q99626 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CDX2Q99626 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.26■■□□□ 1.15
CDX2Q99626 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CDX2Q99626 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDX2Q99626 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
CDX2Q99626 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC22.25■■□□□ 1.15
CDX2Q99626 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDX2Q99626 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.25■■□□□ 1.15
CDX2Q99626 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CDX2Q99626 KRT18P68-201ENST00000392293 1000 ntBASIC22.25■■□□□ 1.15
CDX2Q99626 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.25■■□□□ 1.15
CDX2Q99626 KRT18P57-201ENST00000443599 1254 ntBASIC22.25■■□□□ 1.15
CDX2Q99626 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.25■■□□□ 1.15
CDX2Q99626 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDX2Q99626 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.25■■□□□ 1.15
CDX2Q99626 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.25■■□□□ 1.15
CDX2Q99626 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDX2Q99626 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CDX2Q99626 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDX2Q99626 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDX2Q99626 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDX2Q99626 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.24■■□□□ 1.15
CDX2Q99626 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CDX2Q99626 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC22.24■■□□□ 1.15
CDX2Q99626 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDX2Q99626 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.24■■□□□ 1.15
CDX2Q99626 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDX2Q99626 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.23■■□□□ 1.15
CDX2Q99626 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 AC087388.1-201ENST00000571370 1112 ntBASIC22.23■■□□□ 1.15
CDX2Q99626 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.23■■□□□ 1.15
CDX2Q99626 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC22.23■■□□□ 1.15
CDX2Q99626 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CDX2Q99626 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.22■■□□□ 1.15
CDX2Q99626 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.22■■□□□ 1.15
CDX2Q99626 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.22■■□□□ 1.15
CDX2Q99626 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC22.22■■□□□ 1.15
CDX2Q99626 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.22■■□□□ 1.15
CDX2Q99626 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.22■■□□□ 1.15
CDX2Q99626 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.22■■□□□ 1.15
CDX2Q99626 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC22.22■■□□□ 1.15
CDX2Q99626 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.22■■□□□ 1.15
CDX2Q99626 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 AC145676.1-201ENST00000514988 2004 ntBASIC22.22■■□□□ 1.15
CDX2Q99626 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 AC022211.4-201ENST00000625094 2161 ntBASIC22.22■■□□□ 1.15
CDX2Q99626 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX2Q99626 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
CDX2Q99626 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.21■■□□□ 1.15
CDX2Q99626 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX2Q99626 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX2Q99626 AC061975.6-201ENST00000579045 1553 ntBASIC22.21■■□□□ 1.15
CDX2Q99626 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX2Q99626 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CDX2Q99626 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX2Q99626 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CDX2Q99626 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.21■■□□□ 1.15
CDX2Q99626 AC091799.1-201ENST00000422823 811 ntBASIC22.21■■□□□ 1.15
CDX2Q99626 AL355355.2-201ENST00000442321 338 ntBASIC22.21■■□□□ 1.15
CDX2Q99626 CDV3P1-201ENST00000471403 739 ntBASIC22.21■■□□□ 1.15
CDX2Q99626 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC22.21■■□□□ 1.15
CDX2Q99626 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
CDX2Q99626 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX2Q99626 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.21■■□□□ 1.15
CDX2Q99626 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CDX2Q99626 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms