Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS35Q96QK1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
VPS35Q96QK1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS35Q96QK1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS35Q96QK1 MYCNOS-205ENST00000641950 531 ntBASIC20.82■□□□□ 0.92
VPS35Q96QK1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
VPS35Q96QK1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS35Q96QK1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS35Q96QK1 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 SLC7A5P2-201ENST00000553010 536 ntBASIC20.81■□□□□ 0.92
VPS35Q96QK1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 AL137784.2-201ENST00000607332 1000 ntBASIC20.81■□□□□ 0.92
VPS35Q96QK1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
VPS35Q96QK1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS35Q96QK1 LINC00565-201ENST00000562710 2331 ntBASIC20.81■□□□□ 0.92
VPS35Q96QK1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VPS35Q96QK1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS35Q96QK1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS35Q96QK1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS35Q96QK1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS35Q96QK1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS35Q96QK1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS35Q96QK1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS35Q96QK1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS35Q96QK1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS35Q96QK1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
VPS35Q96QK1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS35Q96QK1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS35Q96QK1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS35Q96QK1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS35Q96QK1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS35Q96QK1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS35Q96QK1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.77■□□□□ 0.92
VPS35Q96QK1 BID-214ENST00000617586 542 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS35Q96QK1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS35Q96QK1 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms