Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 DUX4L16-201ENST00000555130 1264 ntBASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 AL109923.1-201ENST00000618799 583 ntBASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLIP3Q96DZ5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 AC104771.1-201ENST00000603335 964 ntBASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 AC120498.10-201ENST00000621827 505 ntBASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.12■□□□□ 0.81
CLIP3Q96DZ5 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 NCF1B-203ENST00000435988 1254 ntBASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 AC008175.2-201ENST00000612840 297 ntBASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 AC127496.7-201ENST00000625110 1798 ntBASIC20.11■□□□□ 0.81
CLIP3Q96DZ5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 AF106564.1-201ENST00000607058 2553 ntBASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 GPX1P1-201ENST00000388829 606 ntBASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 AC005181.1-201ENST00000604782 1256 ntBASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 AC010536.3-201ENST00000620306 533 ntBASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 GUSBP5-202ENST00000510805 1989 ntBASIC20.1■□□□□ 0.81
CLIP3Q96DZ5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 AL355802.2-201ENST00000402069 882 ntBASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 SLC7A5P2-201ENST00000553010 536 ntBASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP3Q96DZ5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms