Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 AC097658.1-201ENST00000475555 843 ntBASIC20.47■□□□□ 0.87
LMX1AQ8TE12 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 C11orf96-202ENST00000528572 1834 ntBASIC20.46■□□□□ 0.87
LMX1AQ8TE12 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1AQ8TE12 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
LMX1AQ8TE12 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
LMX1AQ8TE12 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 POU5F1P3-201ENST00000428824 1078 ntBASIC20.45■□□□□ 0.86
LMX1AQ8TE12 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 AC083880.1-201ENST00000608266 535 ntBASIC20.45■□□□□ 0.86
LMX1AQ8TE12 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1AQ8TE12 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.44■□□□□ 0.86
LMX1AQ8TE12 AC091799.1-201ENST00000422823 811 ntBASIC20.44■□□□□ 0.86
LMX1AQ8TE12 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1AQ8TE12 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 DUSP5P2-201ENST00000426873 1033 ntBASIC20.43■□□□□ 0.86
LMX1AQ8TE12 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.43■□□□□ 0.86
LMX1AQ8TE12 CDV3P1-201ENST00000471403 739 ntBASIC20.43■□□□□ 0.86
LMX1AQ8TE12 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 AC091874.3-201ENST00000512672 1195 ntBASIC20.43■□□□□ 0.86
LMX1AQ8TE12 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1AQ8TE12 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 LSM12P1-201ENST00000411836 588 ntBASIC20.42■□□□□ 0.86
LMX1AQ8TE12 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 AC066615.1-201ENST00000640911 628 ntBASIC20.42■□□□□ 0.86
LMX1AQ8TE12 MYC-209ENST00000641252 345 ntBASIC20.42■□□□□ 0.86
LMX1AQ8TE12 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms