Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 MKRN4P-201ENST00000444706 1521 ntBASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 MIPEPP3-201ENST00000412105 444 ntBASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
SHKBP1Q8TBC3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 MIR4758-201ENST00000577688 71 ntBASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 KRT16P2-201ENST00000414673 1423 ntBASIC22.05■■□□□ 1.12
SHKBP1Q8TBC3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 AC008694.1-202ENST00000636953 945 ntBASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 RBM17P2-201ENST00000616397 1405 ntBASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 AC061975.6-201ENST00000579045 1553 ntBASIC22.04■■□□□ 1.12
SHKBP1Q8TBC3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 AC069236.1-201ENST00000604339 616 ntBASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHKBP1Q8TBC3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 AC003102.1-202ENST00000563394 1796 ntBASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 AL512625.2-201ENST00000417533 625 ntBASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHKBP1Q8TBC3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.02■■□□□ 1.11
SHKBP1Q8TBC3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.02■■□□□ 1.11
SHKBP1Q8TBC3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
SHKBP1Q8TBC3 GUSBP5-202ENST00000510805 1989 ntBASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
SHKBP1Q8TBC3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms