Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 AF213884.3-201ENST00000563833 479 ntBASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLHC1Q8NHS4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLHC1Q8NHS4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLHC1Q8NHS4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CLHC1Q8NHS4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.08■□□□□ 0.81
CLHC1Q8NHS4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.08■□□□□ 0.81
CLHC1Q8NHS4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.08■□□□□ 0.81
CLHC1Q8NHS4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLHC1Q8NHS4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLHC1Q8NHS4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLHC1Q8NHS4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CLHC1Q8NHS4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLHC1Q8NHS4 AC055733.4-201ENST00000638462 1354 ntBASIC20.08■□□□□ 0.8
CLHC1Q8NHS4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 SLC25A24-204ENST00000569674 2357 ntBASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 AC009237.3-201ENST00000393279 1427 ntBASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.07■□□□□ 0.8
CLHC1Q8NHS4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 EDA-201ENST00000338901 1233 ntBASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLHC1Q8NHS4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 AC005224.4-201ENST00000583262 1652 ntBASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLHC1Q8NHS4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 MIR939-201ENST00000401314 82 ntBASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 AL355001.2-201ENST00000620617 1191 ntBASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLHC1Q8NHS4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CLHC1Q8NHS4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms