Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 AL049796.1-201ENST00000565336 1766 ntBASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.39■□□□□ 0.7
DEPDC4Q8N2C3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 AC091305.1-201ENST00000479476 895 ntBASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 AC136469.2-201ENST00000623944 1028 ntBASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 AL031602.1-201ENST00000633169 911 ntBASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DEPDC4Q8N2C3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 AC027682.1-201ENST00000562846 899 ntBASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 AF213884.3-201ENST00000563833 479 ntBASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 MIR3181-201ENST00000578512 73 ntBASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
DEPDC4Q8N2C3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 AL031432.3-201ENST00000607698 485 ntBASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 pRNA.6-201ENST00000610482 90 ntBASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 pRNA.5-201ENST00000612139 90 ntBASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 pRNA.11-201ENST00000618423 90 ntBASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 pRNA.13-201ENST00000619112 90 ntBASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 AL136967.2-201ENST00000623968 743 ntBASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DEPDC4Q8N2C3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 MIR939-201ENST00000401314 82 ntBASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 AC006455.2-201ENST00000429931 906 ntBASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 AC008764.7-201ENST00000593779 1081 ntBASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DEPDC4Q8N2C3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
DEPDC4Q8N2C3 RASA4CP-201ENST00000424092 1398 ntBASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms