Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 POU5F1P4-201ENST00000413175 1085 ntBASIC19.44■□□□□ 0.7
BEST3Q8N1M1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BEST3Q8N1M1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
BEST3Q8N1M1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 TSPY6P-201ENST00000448518 926 ntBASIC19.42■□□□□ 0.7
BEST3Q8N1M1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
BEST3Q8N1M1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 AC026471.6-201ENST00000622954 1905 ntBASIC19.41■□□□□ 0.7
BEST3Q8N1M1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
BEST3Q8N1M1 AC061975.6-201ENST00000579045 1553 ntBASIC19.4■□□□□ 0.7
BEST3Q8N1M1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 GUSBP6-202ENST00000438529 1198 ntBASIC19.4■□□□□ 0.7
BEST3Q8N1M1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BEST3Q8N1M1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
BEST3Q8N1M1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
BEST3Q8N1M1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 SLC29A4P1-201ENST00000398760 971 ntBASIC19.39■□□□□ 0.69
BEST3Q8N1M1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 CYP2T1P-201ENST00000432607 1285 ntBASIC19.39■□□□□ 0.69
BEST3Q8N1M1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 AF201337.1-201ENST00000520239 748 ntBASIC19.39■□□□□ 0.69
BEST3Q8N1M1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 AC105036.2-201ENST00000569468 176 ntBASIC19.39■□□□□ 0.69
BEST3Q8N1M1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms