Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.54■□□□□ 0.88
VRK3Q8IV63 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 AC008175.2-201ENST00000612840 297 ntBASIC20.54■□□□□ 0.88
VRK3Q8IV63 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
VRK3Q8IV63 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VRK3Q8IV63 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VRK3Q8IV63 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.53■□□□□ 0.88
VRK3Q8IV63 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.53■□□□□ 0.88
VRK3Q8IV63 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VRK3Q8IV63 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VRK3Q8IV63 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VRK3Q8IV63 POU5F1P4-201ENST00000413175 1085 ntBASIC20.52■□□□□ 0.88
VRK3Q8IV63 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.52■□□□□ 0.88
VRK3Q8IV63 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VRK3Q8IV63 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.52■□□□□ 0.88
VRK3Q8IV63 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.52■□□□□ 0.88
VRK3Q8IV63 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VRK3Q8IV63 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VRK3Q8IV63 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VRK3Q8IV63 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VRK3Q8IV63 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
VRK3Q8IV63 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 UBE2DNL-204ENST00000602536 740 ntBASIC20.51■□□□□ 0.87
VRK3Q8IV63 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VRK3Q8IV63 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.51■□□□□ 0.87
VRK3Q8IV63 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
VRK3Q8IV63 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VRK3Q8IV63 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VRK3Q8IV63 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.49■□□□□ 0.87
VRK3Q8IV63 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
VRK3Q8IV63 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VRK3Q8IV63 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VRK3Q8IV63 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VRK3Q8IV63 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VRK3Q8IV63 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VRK3Q8IV63 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
VRK3Q8IV63 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.49■□□□□ 0.87
VRK3Q8IV63 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VRK3Q8IV63 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VRK3Q8IV63 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VRK3Q8IV63 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VRK3Q8IV63 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VRK3Q8IV63 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VRK3Q8IV63 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VRK3Q8IV63 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 AC022517.1-201ENST00000592429 346 ntBASIC20.48■□□□□ 0.87
VRK3Q8IV63 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.48■□□□□ 0.87
VRK3Q8IV63 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VRK3Q8IV63 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms