Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
UBE3DQ7Z6J8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 POU5F1P4-201ENST00000413175 1085 ntBASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 KRT18P5-201ENST00000436075 1291 ntBASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 AC008175.2-201ENST00000612840 297 ntBASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.91■□□□□ 0.78
UBE3DQ7Z6J8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
UBE3DQ7Z6J8 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
UBE3DQ7Z6J8 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
UBE3DQ7Z6J8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 KRT19P1-201ENST00000405746 1186 ntBASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
UBE3DQ7Z6J8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 MIR935-201ENST00000401179 91 ntBASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
UBE3DQ7Z6J8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 AL162430.1-201ENST00000480705 870 ntBASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UBE3DQ7Z6J8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms