Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM40Q6P9F5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM40Q6P9F5 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM40Q6P9F5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L2-201ENST00000561772 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 AC087623.3-201ENST00000607047 1098 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L6-201ENST00000626483 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L1-201ENST00000627662 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L8-201ENST00000629013 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L3-201ENST00000630187 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L7-201ENST00000630678 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUX4L5-201ENST00000630834 1275 ntBASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
TRIM40Q6P9F5 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM40Q6P9F5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM40Q6P9F5 FEM1AP4-201ENST00000443167 1987 ntBASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms