Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC88AQ3V6T2 KRT18P21-201ENST00000515767 1272 ntBASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
CCDC88AQ3V6T2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC25.89■■□□□ 1.73
CCDC88AQ3V6T2 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC25.89■■□□□ 1.73
CCDC88AQ3V6T2 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.73
CCDC88AQ3V6T2 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
CCDC88AQ3V6T2 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 AC137767.1-201ENST00000602918 1920 ntBASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 BX088651.1-201ENST00000540551 451 ntBASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 PPOX-219ENST00000544598 813 ntTSL 2 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 POU5F1P4-201ENST00000413175 1085 ntBASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 AL355075.4-201ENST00000554988 638 ntBASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 AL591742.1-201ENST00000604433 565 ntBASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
CCDC88AQ3V6T2 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 AC127496.7-201ENST00000625110 1798 ntBASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC88AQ3V6T2 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 KLF2-202ENST00000592003 564 ntTSL 3 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 CYP2T3P-201ENST00000601990 817 ntBASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 Z99916.2-201ENST00000604037 246 ntBASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
CCDC88AQ3V6T2 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 LSM12P1-201ENST00000411836 588 ntBASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 AC243732.1-201ENST00000612648 864 ntBASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC88AQ3V6T2 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms