Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC29.36■■■□□ 2.29
MSH6P52701 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC29.36■■■□□ 2.29
MSH6P52701 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC29.35■■■□□ 2.29
MSH6P52701 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC29.35■■■□□ 2.29
MSH6P52701 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC29.35■■■□□ 2.29
MSH6P52701 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
MSH6P52701 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
MSH6P52701 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC29.35■■■□□ 2.29
MSH6P52701 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC29.35■■■□□ 2.29
MSH6P52701 REXO2-208ENST00000539754 791 ntTSL 2 BASIC29.35■■■□□ 2.29
MSH6P52701 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC29.35■■■□□ 2.29
MSH6P52701 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
MSH6P52701 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
MSH6P52701 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
MSH6P52701 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
MSH6P52701 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
MSH6P52701 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.34■■■□□ 2.29
MSH6P52701 MFF-205ENST00000354503 1085 ntTSL 2 BASIC29.34■■■□□ 2.29
MSH6P52701 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC29.34■■■□□ 2.29
MSH6P52701 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
MSH6P52701 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC29.33■■■□□ 2.29
MSH6P52701 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
MSH6P52701 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.33■■■□□ 2.29
MSH6P52701 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
MSH6P52701 KLF2-202ENST00000592003 564 ntTSL 3 BASIC29.33■■■□□ 2.29
MSH6P52701 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC29.33■■■□□ 2.29
MSH6P52701 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
MSH6P52701 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
MSH6P52701 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
MSH6P52701 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC29.32■■■□□ 2.28
MSH6P52701 MCRIP2P1-201ENST00000394346 511 ntBASIC29.32■■■□□ 2.28
MSH6P52701 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH6P52701 AC091799.1-201ENST00000422823 811 ntBASIC29.32■■■□□ 2.28
MSH6P52701 TSPY15P-201ENST00000457163 923 ntBASIC29.32■■■□□ 2.28
MSH6P52701 KRT18P35-201ENST00000510488 1269 ntBASIC29.32■■■□□ 2.28
MSH6P52701 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC29.32■■■□□ 2.28
MSH6P52701 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
MSH6P52701 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
MSH6P52701 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
MSH6P52701 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH6P52701 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH6P52701 RARG-204ENST00000543726 1779 ntTSL 2 BASIC29.31■■■□□ 2.28
MSH6P52701 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC29.31■■■□□ 2.28
MSH6P52701 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC29.31■■■□□ 2.28
MSH6P52701 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC29.31■■■□□ 2.28
MSH6P52701 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 AP001412.1-201ENST00000608405 714 ntBASIC29.31■■■□□ 2.28
MSH6P52701 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH6P52701 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC29.3■■■□□ 2.28
MSH6P52701 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC29.3■■■□□ 2.28
MSH6P52701 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC29.3■■■□□ 2.28
MSH6P52701 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC29.3■■■□□ 2.28
MSH6P52701 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 PREB-202ENST00000406567 1910 ntTSL 5 BASIC29.3■■■□□ 2.28
MSH6P52701 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH6P52701 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC29.29■■■□□ 2.28
MSH6P52701 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH6P52701 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH6P52701 TMPOP1-202ENST00000424642 1267 ntBASIC29.29■■■□□ 2.28
MSH6P52701 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
MSH6P52701 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC29.29■■■□□ 2.28
MSH6P52701 CDV3P1-201ENST00000471403 739 ntBASIC29.29■■■□□ 2.28
MSH6P52701 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC29.29■■■□□ 2.28
MSH6P52701 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC29.29■■■□□ 2.28
MSH6P52701 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC29.29■■■□□ 2.28
MSH6P52701 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
MSH6P52701 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH6P52701 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC29.29■■■□□ 2.28
MSH6P52701 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
MSH6P52701 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
MSH6P52701 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
MSH6P52701 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
MSH6P52701 THRA-202ENST00000394121 2260 ntTSL 2 BASIC29.28■■■□□ 2.28
MSH6P52701 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
MSH6P52701 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
MSH6P52701 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
MSH6P52701 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
MSH6P52701 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC29.27■■■□□ 2.28
MSH6P52701 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
MSH6P52701 CD177P1-201ENST00000606252 935 ntBASIC29.27■■■□□ 2.28
MSH6P52701 SNX21-213ENST00000614929 587 ntTSL 5 BASIC29.27■■■□□ 2.28
MSH6P52701 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.28
MSH6P52701 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC29.27■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms