Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF4P43489 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 C11orf96-202ENST00000528572 1834 ntBASIC21.2■□□□□ 0.98
TNFRSF4P43489 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF4P43489 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 AL355472.2-201ENST00000422958 438 ntBASIC21.19■□□□□ 0.98
TNFRSF4P43489 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 CYP2T3P-201ENST00000601990 817 ntBASIC21.19■□□□□ 0.98
TNFRSF4P43489 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.19■□□□□ 0.98
TNFRSF4P43489 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF4P43489 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.18■□□□□ 0.98
TNFRSF4P43489 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 KRT17P1-201ENST00000399211 1546 ntBASIC21.18■□□□□ 0.98
TNFRSF4P43489 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF4P43489 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.18■□□□□ 0.98
TNFRSF4P43489 FAM99A-202ENST00000538190 1989 ntBASIC21.17■□□□□ 0.98
TNFRSF4P43489 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TNFRSF4P43489 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.17■□□□□ 0.98
TNFRSF4P43489 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.17■□□□□ 0.98
TNFRSF4P43489 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.17■□□□□ 0.98
TNFRSF4P43489 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF4P43489 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TNFRSF4P43489 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.16■□□□□ 0.98
TNFRSF4P43489 AC068473.5-201ENST00000616428 2072 ntBASIC21.16■□□□□ 0.98
TNFRSF4P43489 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF4P43489 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF4P43489 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF4P43489 MCRIP2P1-201ENST00000394346 511 ntBASIC21.16■□□□□ 0.98
TNFRSF4P43489 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF4P43489 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.16■□□□□ 0.98
TNFRSF4P43489 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.16■□□□□ 0.98
TNFRSF4P43489 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.16■□□□□ 0.98
TNFRSF4P43489 UNC93B5-201ENST00000530315 699 ntBASIC21.16■□□□□ 0.98
TNFRSF4P43489 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF4P43489 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF4P43489 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 AC093827.2-201ENST00000512654 315 ntBASIC21.15■□□□□ 0.98
TNFRSF4P43489 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF4P43489 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFRSF4P43489 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.14■□□□□ 0.98
TNFRSF4P43489 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TNFRSF4P43489 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.14■□□□□ 0.98
TNFRSF4P43489 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TNFRSF4P43489 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TNFRSF4P43489 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
TNFRSF4P43489 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF4P43489 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms