Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HNF4AP41235 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.29■□□□□ 0.84
HNF4AP41235 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 AC123595.1-201ENST00000440769 1046 ntBASIC20.29■□□□□ 0.84
HNF4AP41235 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.29■□□□□ 0.84
HNF4AP41235 CCDC92B-201ENST00000575506 885 ntBASIC20.29■□□□□ 0.84
HNF4AP41235 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.29■□□□□ 0.84
HNF4AP41235 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HNF4AP41235 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HNF4AP41235 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.29■□□□□ 0.84
HNF4AP41235 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.28■□□□□ 0.84
HNF4AP41235 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HNF4AP41235 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HNF4AP41235 AF106564.1-201ENST00000607058 2553 ntBASIC20.28■□□□□ 0.84
HNF4AP41235 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
HNF4AP41235 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.28■□□□□ 0.84
HNF4AP41235 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HNF4AP41235 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HNF4AP41235 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
HNF4AP41235 MIR935-201ENST00000401179 91 ntBASIC20.28■□□□□ 0.84
HNF4AP41235 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
HNF4AP41235 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.28■□□□□ 0.84
HNF4AP41235 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HNF4AP41235 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HNF4AP41235 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.27■□□□□ 0.84
HNF4AP41235 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HNF4AP41235 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HNF4AP41235 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HNF4AP41235 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HNF4AP41235 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.27■□□□□ 0.84
HNF4AP41235 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HNF4AP41235 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HNF4AP41235 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HNF4AP41235 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.27■□□□□ 0.84
HNF4AP41235 AC079140.4-201ENST00000507448 529 ntBASIC20.27■□□□□ 0.84
HNF4AP41235 EEF1DP3-203ENST00000566025 782 ntBASIC20.27■□□□□ 0.84
HNF4AP41235 AC053503.5-201ENST00000601508 636 ntBASIC20.27■□□□□ 0.84
HNF4AP41235 AC087623.3-201ENST00000607047 1098 ntBASIC20.27■□□□□ 0.84
HNF4AP41235 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.27■□□□□ 0.84
HNF4AP41235 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.27■□□□□ 0.83
HNF4AP41235 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HNF4AP41235 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HNF4AP41235 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HNF4AP41235 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 AL049796.1-201ENST00000565336 1766 ntBASIC20.26■□□□□ 0.83
HNF4AP41235 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
HNF4AP41235 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 KRT18P14-201ENST00000534205 1250 ntBASIC20.26■□□□□ 0.83
HNF4AP41235 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.26■□□□□ 0.83
HNF4AP41235 RARRES2P6-201ENST00000567333 442 ntBASIC20.26■□□□□ 0.83
HNF4AP41235 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HNF4AP41235 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.25■□□□□ 0.83
HNF4AP41235 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.25■□□□□ 0.83
HNF4AP41235 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.25■□□□□ 0.83
HNF4AP41235 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.25■□□□□ 0.83
HNF4AP41235 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.25■□□□□ 0.83
HNF4AP41235 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.25■□□□□ 0.83
HNF4AP41235 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
HNF4AP41235 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.25■□□□□ 0.83
HNF4AP41235 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.25■□□□□ 0.83
HNF4AP41235 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HNF4AP41235 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.24■□□□□ 0.83
HNF4AP41235 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.24■□□□□ 0.83
HNF4AP41235 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.24■□□□□ 0.83
HNF4AP41235 AC097381.1-201ENST00000429019 1296 ntBASIC20.24■□□□□ 0.83
HNF4AP41235 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.24■□□□□ 0.83
HNF4AP41235 TERF1P2-201ENST00000583350 1212 ntBASIC20.24■□□□□ 0.83
HNF4AP41235 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.24■□□□□ 0.83
HNF4AP41235 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HNF4AP41235 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.24■□□□□ 0.83
HNF4AP41235 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HNF4AP41235 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HNF4AP41235 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms