Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SHMT2P34897 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHMT2P34897 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.51■□□□□ 0.87
SHMT2P34897 AC010542.4-201ENST00000563151 1910 ntBASIC20.51■□□□□ 0.87
SHMT2P34897 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.51■□□□□ 0.87
SHMT2P34897 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.5■□□□□ 0.87
SHMT2P34897 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.5■□□□□ 0.87
SHMT2P34897 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.5■□□□□ 0.87
SHMT2P34897 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.5■□□□□ 0.87
SHMT2P34897 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.5■□□□□ 0.87
SHMT2P34897 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.5■□□□□ 0.87
SHMT2P34897 AL137784.2-201ENST00000607332 1000 ntBASIC20.5■□□□□ 0.87
SHMT2P34897 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.5■□□□□ 0.87
SHMT2P34897 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHMT2P34897 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SHMT2P34897 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHMT2P34897 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.49■□□□□ 0.87
SHMT2P34897 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.49■□□□□ 0.87
SHMT2P34897 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.49■□□□□ 0.87
SHMT2P34897 KRT18P11-201ENST00000435214 1283 ntBASIC20.49■□□□□ 0.87
SHMT2P34897 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.49■□□□□ 0.87
SHMT2P34897 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
SHMT2P34897 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.49■□□□□ 0.87
SHMT2P34897 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SHMT2P34897 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.48■□□□□ 0.87
SHMT2P34897 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.48■□□□□ 0.87
SHMT2P34897 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
SHMT2P34897 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 IKBKGP1-201ENST00000612193 1073 ntBASIC20.48■□□□□ 0.87
SHMT2P34897 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.48■□□□□ 0.87
SHMT2P34897 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SHMT2P34897 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHMT2P34897 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 AC006015.1-201ENST00000429970 570 ntBASIC20.47■□□□□ 0.87
SHMT2P34897 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 KRT18P20-201ENST00000548986 1279 ntBASIC20.47■□□□□ 0.87
SHMT2P34897 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.47■□□□□ 0.87
SHMT2P34897 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.47■□□□□ 0.87
SHMT2P34897 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.47■□□□□ 0.87
SHMT2P34897 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.47■□□□□ 0.87
SHMT2P34897 AC008175.2-201ENST00000612840 297 ntBASIC20.47■□□□□ 0.87
SHMT2P34897 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.47■□□□□ 0.87
SHMT2P34897 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SHMT2P34897 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHMT2P34897 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SHMT2P34897 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.46■□□□□ 0.87
SHMT2P34897 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.46■□□□□ 0.87
SHMT2P34897 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.46■□□□□ 0.87
SHMT2P34897 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.46■□□□□ 0.87
SHMT2P34897 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.46■□□□□ 0.87
SHMT2P34897 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.46■□□□□ 0.87
SHMT2P34897 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHMT2P34897 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SHMT2P34897 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.46■□□□□ 0.87
SHMT2P34897 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
SHMT2P34897 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.45■□□□□ 0.87
SHMT2P34897 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SHMT2P34897 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SHMT2P34897 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 POU5F1P4-201ENST00000413175 1085 ntBASIC20.45■□□□□ 0.86
SHMT2P34897 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHMT2P34897 AC092437.1-201ENST00000624794 1048 ntBASIC20.45■□□□□ 0.86
SHMT2P34897 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SHMT2P34897 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms