Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC1P18827 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SDC1P18827 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SDC1P18827 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SDC1P18827 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.98■□□□□ 0.79
SDC1P18827 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 PLK5-205ENST00000642079 1969 ntBASIC19.97■□□□□ 0.79
SDC1P18827 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.97■□□□□ 0.79
SDC1P18827 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.97■□□□□ 0.79
SDC1P18827 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SDC1P18827 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.97■□□□□ 0.79
SDC1P18827 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.97■□□□□ 0.79
SDC1P18827 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 AC073130.3-201ENST00000624389 2278 ntBASIC19.97■□□□□ 0.79
SDC1P18827 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.97■□□□□ 0.79
SDC1P18827 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SDC1P18827 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC1P18827 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.96■□□□□ 0.79
SDC1P18827 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.96■□□□□ 0.79
SDC1P18827 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.96■□□□□ 0.79
SDC1P18827 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.96■□□□□ 0.79
SDC1P18827 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.96■□□□□ 0.79
SDC1P18827 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.96■□□□□ 0.79
SDC1P18827 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC1P18827 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SDC1P18827 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.95■□□□□ 0.78
SDC1P18827 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.95■□□□□ 0.78
SDC1P18827 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 AC006128.1-201ENST00000624704 1661 ntBASIC19.95■□□□□ 0.78
SDC1P18827 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.95■□□□□ 0.78
SDC1P18827 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.95■□□□□ 0.78
SDC1P18827 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.95■□□□□ 0.78
SDC1P18827 AL139246.5-201ENST00000606645 996 ntBASIC19.95■□□□□ 0.78
SDC1P18827 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.95■□□□□ 0.78
SDC1P18827 LINC01521-201ENST00000504184 1943 ntBASIC19.95■□□□□ 0.78
SDC1P18827 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.95■□□□□ 0.78
SDC1P18827 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.95■□□□□ 0.78
SDC1P18827 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SDC1P18827 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SDC1P18827 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SDC1P18827 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC1P18827 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 EEF1DP3-203ENST00000566025 782 ntBASIC19.94■□□□□ 0.78
SDC1P18827 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.94■□□□□ 0.78
SDC1P18827 TPRG1LP1-201ENST00000598702 760 ntBASIC19.94■□□□□ 0.78
SDC1P18827 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SDC1P18827 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.94■□□□□ 0.78
SDC1P18827 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.94■□□□□ 0.78
SDC1P18827 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
SDC1P18827 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SDC1P18827 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.94■□□□□ 0.78
SDC1P18827 FEM1AP1-201ENST00000431297 1995 ntBASIC19.94■□□□□ 0.78
SDC1P18827 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC1P18827 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.93■□□□□ 0.78
SDC1P18827 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC1P18827 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC1P18827 AL354811.1-201ENST00000610286 706 ntBASIC19.93■□□□□ 0.78
SDC1P18827 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC1P18827 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SDC1P18827 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
SDC1P18827 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.93■□□□□ 0.78
SDC1P18827 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.93■□□□□ 0.78
SDC1P18827 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 LINC01006-201ENST00000333319 2292 ntBASIC19.92■□□□□ 0.78
SDC1P18827 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.92■□□□□ 0.78
SDC1P18827 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.92■□□□□ 0.78
SDC1P18827 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.92■□□□□ 0.78
SDC1P18827 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms