Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC020907.5-201ENST00000624372 1936 ntBASIC18.64■□□□□ 0.57
LIMS3P0CW19 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMS3P0CW19 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIMS3P0CW19 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMS3P0CW19 AC007225.1-201ENST00000566331 1836 ntBASIC18.63■□□□□ 0.57
LIMS3P0CW19 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 AC009299.2-201ENST00000482477 511 ntBASIC18.62■□□□□ 0.57
LIMS3P0CW19 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.62■□□□□ 0.57
LIMS3P0CW19 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIMS3P0CW19 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIMS3P0CW19 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIMS3P0CW19 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIMS3P0CW19 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LIMS3P0CW19 RNF165-205ENST00000588679 2904 ntBASIC18.6■□□□□ 0.57
LIMS3P0CW19 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.59■□□□□ 0.57
LIMS3P0CW19 AL162377.1-201ENST00000618844 1793 ntBASIC18.59■□□□□ 0.57
LIMS3P0CW19 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIMS3P0CW19 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIMS3P0CW19 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.58■□□□□ 0.57
LIMS3P0CW19 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LIMS3P0CW19 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMS3P0CW19 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIMS3P0CW19 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIMS3P0CW19 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
LIMS3P0CW19 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms