Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL1P09341 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.23■□□□□ 0.19
CXCL1P09341 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC16.23■□□□□ 0.19
CXCL1P09341 AC139795.1-202ENST00000500444 432 ntBASIC16.23■□□□□ 0.19
CXCL1P09341 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL1P09341 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.23■□□□□ 0.19
CXCL1P09341 THA1P-201ENST00000590384 1145 ntBASIC16.23■□□□□ 0.19
CXCL1P09341 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL1P09341 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
CXCL1P09341 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
CXCL1P09341 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL1P09341 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL1P09341 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.23■□□□□ 0.19
CXCL1P09341 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CXCL1P09341 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CXCL1P09341 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL1P09341 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.22■□□□□ 0.19
CXCL1P09341 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.22■□□□□ 0.19
CXCL1P09341 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL1P09341 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CXCL1P09341 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CXCL1P09341 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CXCL1P09341 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.22■□□□□ 0.19
CXCL1P09341 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL1P09341 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.22■□□□□ 0.19
CXCL1P09341 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CXCL1P09341 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.22■□□□□ 0.19
CXCL1P09341 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CXCL1P09341 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CXCL1P09341 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL1P09341 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CXCL1P09341 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.21■□□□□ 0.19
CXCL1P09341 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.21■□□□□ 0.19
CXCL1P09341 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CXCL1P09341 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CXCL1P09341 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CXCL1P09341 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
CXCL1P09341 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.2■□□□□ 0.18
CXCL1P09341 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.2■□□□□ 0.18
CXCL1P09341 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.2■□□□□ 0.18
CXCL1P09341 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.2■□□□□ 0.18
CXCL1P09341 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CXCL1P09341 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.2■□□□□ 0.18
CXCL1P09341 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CXCL1P09341 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.2■□□□□ 0.18
CXCL1P09341 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CXCL1P09341 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CXCL1P09341 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.2■□□□□ 0.18
CXCL1P09341 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CXCL1P09341 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.2■□□□□ 0.18
CXCL1P09341 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.2■□□□□ 0.18
CXCL1P09341 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CXCL1P09341 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CXCL1P09341 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.19■□□□□ 0.18
CXCL1P09341 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.19■□□□□ 0.18
CXCL1P09341 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CXCL1P09341 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CXCL1P09341 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.19■□□□□ 0.18
CXCL1P09341 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
CXCL1P09341 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms