Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.69■□□□□ 0.74
CLPTM1O96005 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLPTM1O96005 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.69■□□□□ 0.74
CLPTM1O96005 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLPTM1O96005 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLPTM1O96005 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CLPTM1O96005 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.69■□□□□ 0.74
CLPTM1O96005 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLPTM1O96005 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CLPTM1O96005 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CLPTM1O96005 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.68■□□□□ 0.74
CLPTM1O96005 AC073314.1-201ENST00000568729 2216 ntBASIC19.68■□□□□ 0.74
CLPTM1O96005 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 BX323043.1-201ENST00000641006 1765 ntBASIC19.68■□□□□ 0.74
CLPTM1O96005 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.68■□□□□ 0.74
CLPTM1O96005 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.68■□□□□ 0.74
CLPTM1O96005 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CLPTM1O96005 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLPTM1O96005 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.68■□□□□ 0.74
CLPTM1O96005 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CLPTM1O96005 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CLPTM1O96005 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CLPTM1O96005 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.67■□□□□ 0.74
CLPTM1O96005 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
CLPTM1O96005 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.67■□□□□ 0.74
CLPTM1O96005 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLPTM1O96005 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.66■□□□□ 0.74
CLPTM1O96005 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.66■□□□□ 0.74
CLPTM1O96005 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.66■□□□□ 0.74
CLPTM1O96005 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.66■□□□□ 0.74
CLPTM1O96005 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.66■□□□□ 0.74
CLPTM1O96005 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.66■□□□□ 0.74
CLPTM1O96005 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.66■□□□□ 0.74
CLPTM1O96005 MIR6722-201ENST00000617286 78 ntBASIC19.66■□□□□ 0.74
CLPTM1O96005 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.66■□□□□ 0.74
CLPTM1O96005 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CLPTM1O96005 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLPTM1O96005 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CLPTM1O96005 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CLPTM1O96005 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CLPTM1O96005 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 MIR6724-1-201ENST00000616420 92 ntBASIC19.65■□□□□ 0.74
CLPTM1O96005 MIR6724-2-201ENST00000616483 92 ntBASIC19.65■□□□□ 0.74
CLPTM1O96005 MIR6724-4-201ENST00000617390 92 ntBASIC19.65■□□□□ 0.74
CLPTM1O96005 MIR6724-3-201ENST00000622482 92 ntBASIC19.65■□□□□ 0.74
CLPTM1O96005 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CLPTM1O96005 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.65■□□□□ 0.74
CLPTM1O96005 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLPTM1O96005 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms