Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4O95639 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
CPSF4O95639 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.92■□□□□ 0.78
CPSF4O95639 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.92■□□□□ 0.78
CPSF4O95639 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4O95639 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CPSF4O95639 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4O95639 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CPSF4O95639 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 PBX2P1-201ENST00000493219 1291 ntBASIC19.92■□□□□ 0.78
CPSF4O95639 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4O95639 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4O95639 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.92■□□□□ 0.78
CPSF4O95639 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
CPSF4O95639 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4O95639 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.91■□□□□ 0.78
CPSF4O95639 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CPSF4O95639 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CPSF4O95639 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.91■□□□□ 0.78
CPSF4O95639 AC099791.1-201ENST00000416440 715 ntBASIC19.91■□□□□ 0.78
CPSF4O95639 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.91■□□□□ 0.78
CPSF4O95639 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.91■□□□□ 0.78
CPSF4O95639 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.91■□□□□ 0.78
CPSF4O95639 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CPSF4O95639 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CPSF4O95639 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4O95639 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.9■□□□□ 0.78
CPSF4O95639 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.9■□□□□ 0.78
CPSF4O95639 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.9■□□□□ 0.78
CPSF4O95639 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CPSF4O95639 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CPSF4O95639 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.9■□□□□ 0.78
CPSF4O95639 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.9■□□□□ 0.78
CPSF4O95639 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.9■□□□□ 0.78
CPSF4O95639 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CPSF4O95639 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 TSPY26P-201ENST00000476365 1326 ntBASIC19.9■□□□□ 0.78
CPSF4O95639 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CPSF4O95639 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.9■□□□□ 0.78
CPSF4O95639 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4O95639 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CPSF4O95639 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.89■□□□□ 0.77
CPSF4O95639 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CPSF4O95639 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CPSF4O95639 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CPSF4O95639 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CPSF4O95639 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CPSF4O95639 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.89■□□□□ 0.77
CPSF4O95639 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CPSF4O95639 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.89■□□□□ 0.77
CPSF4O95639 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.89■□□□□ 0.77
CPSF4O95639 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.89■□□□□ 0.77
CPSF4O95639 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CPSF4O95639 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.89■□□□□ 0.77
CPSF4O95639 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.89■□□□□ 0.77
CPSF4O95639 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.89■□□□□ 0.77
CPSF4O95639 AC105233.4-201ENST00000642045 216 ntBASIC19.89■□□□□ 0.77
CPSF4O95639 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CPSF4O95639 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.88■□□□□ 0.77
CPSF4O95639 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 AC009237.3-201ENST00000393279 1427 ntBASIC19.88■□□□□ 0.77
CPSF4O95639 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.88■□□□□ 0.77
CPSF4O95639 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.88■□□□□ 0.77
CPSF4O95639 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.88■□□□□ 0.77
CPSF4O95639 AC073130.3-201ENST00000624389 2278 ntBASIC19.88■□□□□ 0.77
CPSF4O95639 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CPSF4O95639 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.88■□□□□ 0.77
CPSF4O95639 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.87■□□□□ 0.77
CPSF4O95639 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms