Protein–RNA interactions for Protein: O95602

POLR1A, DNA-directed RNA polymerase I subunit RPA1, humanhuman

Predicted RBP Predictions only

Length 1,720 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1AO95602 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC30.72■■■□□ 2.51
POLR1AO95602 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC30.72■■■□□ 2.51
POLR1AO95602 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
POLR1AO95602 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC30.72■■■□□ 2.51
POLR1AO95602 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
POLR1AO95602 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
POLR1AO95602 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
POLR1AO95602 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
POLR1AO95602 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
POLR1AO95602 OR2A1-AS1-201ENST00000462305 773 ntBASIC30.71■■■□□ 2.51
POLR1AO95602 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC30.71■■■□□ 2.51
POLR1AO95602 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC30.71■■■□□ 2.51
POLR1AO95602 GUSBP5-202ENST00000510805 1989 ntBASIC30.71■■■□□ 2.51
POLR1AO95602 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
POLR1AO95602 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
POLR1AO95602 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC30.71■■■□□ 2.51
POLR1AO95602 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
POLR1AO95602 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
POLR1AO95602 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC30.7■■■□□ 2.51
POLR1AO95602 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC30.7■■■□□ 2.51
POLR1AO95602 C1QBPP2-201ENST00000528754 825 ntBASIC30.7■■■□□ 2.51
POLR1AO95602 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC30.7■■■□□ 2.51
POLR1AO95602 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.51
POLR1AO95602 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
POLR1AO95602 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
POLR1AO95602 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
POLR1AO95602 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
POLR1AO95602 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
POLR1AO95602 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC30.7■■■□□ 2.5
POLR1AO95602 GATS-209ENST00000454084 1030 ntTSL 3 BASIC30.7■■■□□ 2.5
POLR1AO95602 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC30.7■■■□□ 2.5
POLR1AO95602 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
POLR1AO95602 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
POLR1AO95602 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC30.69■■■□□ 2.5
POLR1AO95602 RPPH1-201ENST00000516869 333 ntBASIC30.69■■■□□ 2.5
POLR1AO95602 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC30.69■■■□□ 2.5
POLR1AO95602 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC30.69■■■□□ 2.5
POLR1AO95602 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
POLR1AO95602 ECEL1P1-201ENST00000373592 1742 ntBASIC30.69■■■□□ 2.5
POLR1AO95602 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
POLR1AO95602 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
POLR1AO95602 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
POLR1AO95602 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
POLR1AO95602 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC30.68■■■□□ 2.5
POLR1AO95602 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
POLR1AO95602 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
POLR1AO95602 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC30.67■■■□□ 2.5
POLR1AO95602 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
POLR1AO95602 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
POLR1AO95602 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
POLR1AO95602 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
POLR1AO95602 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
POLR1AO95602 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC30.66■■■□□ 2.5
POLR1AO95602 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC30.66■■■□□ 2.5
POLR1AO95602 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
POLR1AO95602 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
POLR1AO95602 AC069544.1-201ENST00000609399 999 ntBASIC30.66■■■□□ 2.5
POLR1AO95602 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
POLR1AO95602 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
POLR1AO95602 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
POLR1AO95602 AP006587.3-201ENST00000525742 1516 ntBASIC30.66■■■□□ 2.5
POLR1AO95602 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC30.65■■■□□ 2.5
POLR1AO95602 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC30.65■■■□□ 2.5
POLR1AO95602 AC012618.2-201ENST00000428058 849 ntBASIC30.65■■■□□ 2.5
POLR1AO95602 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC30.65■■■□□ 2.5
POLR1AO95602 KRT18P21-201ENST00000515767 1272 ntBASIC30.65■■■□□ 2.5
POLR1AO95602 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC30.65■■■□□ 2.5
POLR1AO95602 AP004607.7-201ENST00000527152 1677 ntBASIC30.65■■■□□ 2.5
POLR1AO95602 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
POLR1AO95602 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
POLR1AO95602 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 AC211429.1-201ENST00000415277 523 ntBASIC30.64■■■□□ 2.5
POLR1AO95602 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 BX088651.1-201ENST00000540551 451 ntBASIC30.64■■■□□ 2.5
POLR1AO95602 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC30.64■■■□□ 2.5
POLR1AO95602 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC30.64■■■□□ 2.5
POLR1AO95602 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC30.64■■■□□ 2.5
POLR1AO95602 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
POLR1AO95602 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC30.64■■■□□ 2.5
POLR1AO95602 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC30.64■■■□□ 2.5
POLR1AO95602 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
POLR1AO95602 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC30.64■■■□□ 2.5
POLR1AO95602 RBM17P2-201ENST00000616397 1405 ntBASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms