Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 YBX1P1-201ENST00000445822 960 ntBASIC20.06■□□□□ 0.8
SEMA3DO95025 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.06■□□□□ 0.8
SEMA3DO95025 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SEMA3DO95025 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.06■□□□□ 0.8
SEMA3DO95025 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.06■□□□□ 0.8
SEMA3DO95025 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SEMA3DO95025 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SEMA3DO95025 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.05■□□□□ 0.8
SEMA3DO95025 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SEMA3DO95025 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.05■□□□□ 0.8
SEMA3DO95025 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SEMA3DO95025 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SEMA3DO95025 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.05■□□□□ 0.8
SEMA3DO95025 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SEMA3DO95025 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.04■□□□□ 0.8
SEMA3DO95025 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SEMA3DO95025 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.04■□□□□ 0.8
SEMA3DO95025 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SEMA3DO95025 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.04■□□□□ 0.8
SEMA3DO95025 ZNRF2P3-201ENST00000424200 374 ntBASIC20.04■□□□□ 0.8
SEMA3DO95025 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SEMA3DO95025 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.04■□□□□ 0.8
SEMA3DO95025 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SEMA3DO95025 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.04■□□□□ 0.8
SEMA3DO95025 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SEMA3DO95025 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
SEMA3DO95025 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SEMA3DO95025 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.03■□□□□ 0.8
SEMA3DO95025 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SEMA3DO95025 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SEMA3DO95025 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SEMA3DO95025 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SEMA3DO95025 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SEMA3DO95025 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SEMA3DO95025 AL049796.1-201ENST00000565336 1766 ntBASIC20.03■□□□□ 0.8
SEMA3DO95025 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 AC005229.4-201ENST00000610085 2198 ntBASIC20.02■□□□□ 0.8
SEMA3DO95025 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SEMA3DO95025 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.02■□□□□ 0.8
SEMA3DO95025 TERF1P2-201ENST00000583350 1212 ntBASIC20.02■□□□□ 0.8
SEMA3DO95025 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.02■□□□□ 0.8
SEMA3DO95025 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SEMA3DO95025 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.02■□□□□ 0.79
SEMA3DO95025 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SEMA3DO95025 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
SEMA3DO95025 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.01■□□□□ 0.79
SEMA3DO95025 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.01■□□□□ 0.79
SEMA3DO95025 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SEMA3DO95025 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20■□□□□ 0.79
SEMA3DO95025 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SEMA3DO95025 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20■□□□□ 0.79
SEMA3DO95025 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SEMA3DO95025 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SEMA3DO95025 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20■□□□□ 0.79
SEMA3DO95025 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20■□□□□ 0.79
SEMA3DO95025 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20■□□□□ 0.79
SEMA3DO95025 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20■□□□□ 0.79
SEMA3DO95025 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20■□□□□ 0.79
SEMA3DO95025 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 AF106564.1-201ENST00000607058 2553 ntBASIC20■□□□□ 0.79
SEMA3DO95025 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20■□□□□ 0.79
SEMA3DO95025 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20■□□□□ 0.79
SEMA3DO95025 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEMA3DO95025 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SEMA3DO95025 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.99■□□□□ 0.79
SEMA3DO95025 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.99■□□□□ 0.79
SEMA3DO95025 AC138907.5-202ENST00000569484 235 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms