Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MKRN4P-201ENST00000444706 1521 ntBASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AL512625.2-201ENST00000417533 625 ntBASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AL138781.1-201ENST00000566567 1274 ntBASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 C11orf96-202ENST00000528572 1834 ntBASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC016405.3-201ENST00000607710 860 ntBASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ECEL1P1-201ENST00000373592 1742 ntBASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC133041.1-202ENST00000642053 222 ntBASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC069152.1-201ENST00000438030 544 ntBASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MIR4758-201ENST00000577688 71 ntBASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
C1QTNF3-AMACRE9PGA6 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.02■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 AC093787.1-201ENST00000450396 207 ntBASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CDV3P1-201ENST00000471403 739 ntBASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 RARRES2P4-201ENST00000514074 484 ntBASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
C1QTNF3-AMACRE9PGA6 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms