Protein–RNA interactions for Protein: Q99J62

Rfc4, Replication factor C subunit 4, mousemouse

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfc4Q99J62 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Rfc4Q99J62 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
Rfc4Q99J62 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
Rfc4Q99J62 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Rfc4Q99J62 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Rfc4Q99J62 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.18■■■□□ 2.26
Rfc4Q99J62 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Rfc4Q99J62 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.16■■■□□ 2.26
Rfc4Q99J62 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC29.14■■■□□ 2.26
Rfc4Q99J62 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.26
Rfc4Q99J62 Nkain2-201ENSMUST00000092602 558 ntBASIC29.13■■■□□ 2.25
Rfc4Q99J62 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
Rfc4Q99J62 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29.11■■■□□ 2.25
Rfc4Q99J62 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC29.09■■■□□ 2.25
Rfc4Q99J62 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC29.09■■■□□ 2.25
Rfc4Q99J62 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Rfc4Q99J62 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Rfc4Q99J62 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC29.07■■■□□ 2.24
Rfc4Q99J62 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Rfc4Q99J62 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC29.06■■■□□ 2.24
Rfc4Q99J62 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Rfc4Q99J62 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC29.06■■■□□ 2.24
Rfc4Q99J62 Gm2415-204ENSMUST00000190235 2004 ntBASIC29.06■■■□□ 2.24
Rfc4Q99J62 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Rfc4Q99J62 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Rfc4Q99J62 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Rfc4Q99J62 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC29.05■■■□□ 2.24
Rfc4Q99J62 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
Rfc4Q99J62 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Rfc4Q99J62 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Rfc4Q99J62 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Rfc4Q99J62 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Rfc4Q99J62 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
Rfc4Q99J62 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Rfc4Q99J62 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Rfc4Q99J62 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
Rfc4Q99J62 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Rfc4Q99J62 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Rfc4Q99J62 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC28.97■■■□□ 2.23
Rfc4Q99J62 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC28.97■■■□□ 2.23
Rfc4Q99J62 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Rfc4Q99J62 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Rfc4Q99J62 Gm7432-201ENSMUST00000210343 879 ntBASIC28.96■■■□□ 2.23
Rfc4Q99J62 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Rfc4Q99J62 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Rfc4Q99J62 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
Rfc4Q99J62 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC28.95■■■□□ 2.22
Rfc4Q99J62 Gm30346-201ENSMUST00000218641 1699 ntBASIC28.94■■■□□ 2.22
Rfc4Q99J62 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Rfc4Q99J62 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
Rfc4Q99J62 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC28.91■■■□□ 2.22
Rfc4Q99J62 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Rfc4Q99J62 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Rfc4Q99J62 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Rfc4Q99J62 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
Rfc4Q99J62 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
Rfc4Q99J62 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.81■■■□□ 2.2
Rfc4Q99J62 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Rfc4Q99J62 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Rfc4Q99J62 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Rfc4Q99J62 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Rfc4Q99J62 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
Rfc4Q99J62 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC28.8■■■□□ 2.2
Rfc4Q99J62 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC28.79■■■□□ 2.2
Rfc4Q99J62 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Rfc4Q99J62 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC28.77■■■□□ 2.2
Rfc4Q99J62 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
Rfc4Q99J62 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC28.76■■■□□ 2.19
Rfc4Q99J62 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Rfc4Q99J62 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Rfc4Q99J62 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
Rfc4Q99J62 Gm11599-201ENSMUST00000118720 878 ntBASIC28.73■■■□□ 2.19
Rfc4Q99J62 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
Rfc4Q99J62 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Rfc4Q99J62 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Rfc4Q99J62 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC28.7■■■□□ 2.18
Rfc4Q99J62 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Rfc4Q99J62 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Rfc4Q99J62 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC28.69■■■□□ 2.18
Rfc4Q99J62 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC28.69■■■□□ 2.18
Rfc4Q99J62 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
Rfc4Q99J62 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
Rfc4Q99J62 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC28.68■■■□□ 2.18
Rfc4Q99J62 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Rfc4Q99J62 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
Rfc4Q99J62 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC28.65■■■□□ 2.18
Rfc4Q99J62 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Rfc4Q99J62 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
Rfc4Q99J62 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Rfc4Q99J62 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Rfc4Q99J62 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Rfc4Q99J62 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC28.58■■■□□ 2.17
Rfc4Q99J62 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Rfc4Q99J62 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Rfc4Q99J62 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Rfc4Q99J62 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Rfc4Q99J62 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Rfc4Q99J62 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC28.55■■■□□ 2.16
Rfc4Q99J62 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC28.54■■■□□ 2.16
Rfc4Q99J62 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Retrieved 100 of 76,532 protein–RNA pairs in 79.8 ms