Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPH3AQ9Y2J0 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 AC016769.1-201ENST00000409132 1010 ntBASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPH3AQ9Y2J0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 AL024507.2-201ENST00000606070 2574 ntBASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RPH3AQ9Y2J0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 HLA-L-209ENST00000420110 1011 ntBASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RPH3AQ9Y2J0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 AP001160.3-201ENST00000601484 763 ntBASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RPH3AQ9Y2J0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 EEF1DP3-203ENST00000566025 782 ntBASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.19■□□□□ 0.66
RPH3AQ9Y2J0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 AC053503.5-201ENST00000601508 636 ntBASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 FBXW4P1-201ENST00000426721 2239 ntBASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.18■□□□□ 0.66
RPH3AQ9Y2J0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms