Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4AQ9UN37 AC005229.4-201ENST00000610085 2198 ntBASIC20.27■□□□□ 0.84
VPS4AQ9UN37 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
VPS4AQ9UN37 AC010141.3-201ENST00000456659 717 ntBASIC20.27■□□□□ 0.84
VPS4AQ9UN37 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4AQ9UN37 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4AQ9UN37 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
VPS4AQ9UN37 Z98882.1-201ENST00000622160 2253 ntBASIC20.27■□□□□ 0.83
VPS4AQ9UN37 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS4AQ9UN37 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4AQ9UN37 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4AQ9UN37 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 AC010525.1-201ENST00000585559 441 ntBASIC20.24■□□□□ 0.83
VPS4AQ9UN37 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS4AQ9UN37 AC026471.6-201ENST00000622954 1905 ntBASIC20.23■□□□□ 0.83
VPS4AQ9UN37 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.23■□□□□ 0.83
VPS4AQ9UN37 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 AC137761.2-201ENST00000561729 223 ntBASIC20.23■□□□□ 0.83
VPS4AQ9UN37 AC145350.3-201ENST00000569033 163 ntBASIC20.23■□□□□ 0.83
VPS4AQ9UN37 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
VPS4AQ9UN37 OXCT2P1-201ENST00000447263 1535 ntBASIC20.22■□□□□ 0.83
VPS4AQ9UN37 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 ABHD17AP1-201ENST00000358206 933 ntBASIC20.22■□□□□ 0.83
VPS4AQ9UN37 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS4AQ9UN37 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms