Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC26.89■■□□□ 1.89
USP42Q9H9J4 AL591742.1-201ENST00000604433 565 ntBASIC26.89■■□□□ 1.89
USP42Q9H9J4 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 KRT16P2-201ENST00000414673 1423 ntBASIC26.88■■□□□ 1.89
USP42Q9H9J4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
USP42Q9H9J4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
USP42Q9H9J4 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
USP42Q9H9J4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USP42Q9H9J4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
USP42Q9H9J4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC26.87■■□□□ 1.89
USP42Q9H9J4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USP42Q9H9J4 UNC93B5-201ENST00000530315 699 ntBASIC26.87■■□□□ 1.89
USP42Q9H9J4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC26.87■■□□□ 1.89
USP42Q9H9J4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USP42Q9H9J4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
USP42Q9H9J4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
USP42Q9H9J4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
USP42Q9H9J4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC26.86■■□□□ 1.89
USP42Q9H9J4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
USP42Q9H9J4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC26.86■■□□□ 1.89
USP42Q9H9J4 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC26.85■■□□□ 1.89
USP42Q9H9J4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.85■■□□□ 1.89
USP42Q9H9J4 RPS2P4-201ENST00000476944 856 ntBASIC26.85■■□□□ 1.89
USP42Q9H9J4 AC026366.1-201ENST00000488803 879 ntBASIC26.85■■□□□ 1.89
USP42Q9H9J4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC26.85■■□□□ 1.89
USP42Q9H9J4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
USP42Q9H9J4 AC243732.1-201ENST00000612648 864 ntBASIC26.85■■□□□ 1.89
USP42Q9H9J4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.85■■□□□ 1.89
USP42Q9H9J4 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USP42Q9H9J4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC26.84■■□□□ 1.89
USP42Q9H9J4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 OR2A1-AS1-201ENST00000462305 773 ntBASIC26.84■■□□□ 1.89
USP42Q9H9J4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC26.84■■□□□ 1.89
USP42Q9H9J4 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC26.84■■□□□ 1.89
USP42Q9H9J4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC26.84■■□□□ 1.89
USP42Q9H9J4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.84■■□□□ 1.89
USP42Q9H9J4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
USP42Q9H9J4 AC233723.2-201ENST00000623798 2106 ntBASIC26.84■■□□□ 1.89
USP42Q9H9J4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
USP42Q9H9J4 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
USP42Q9H9J4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
USP42Q9H9J4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
USP42Q9H9J4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC26.83■■□□□ 1.89
USP42Q9H9J4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.88
USP42Q9H9J4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
USP42Q9H9J4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC26.82■■□□□ 1.88
USP42Q9H9J4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 AC073648.6-201ENST00000641589 218 ntBASIC26.82■■□□□ 1.88
USP42Q9H9J4 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USP42Q9H9J4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
USP42Q9H9J4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
USP42Q9H9J4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms