Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
NUCKS1Q9H1E3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
NUCKS1Q9H1E3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
NUCKS1Q9H1E3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.75■■□□□ 1.23
NUCKS1Q9H1E3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.75■■□□□ 1.23
NUCKS1Q9H1E3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
NUCKS1Q9H1E3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 TSPY26P-201ENST00000476365 1326 ntBASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
NUCKS1Q9H1E3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 AC009237.3-201ENST00000393279 1427 ntBASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
NUCKS1Q9H1E3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 IGHV3-19-201ENST00000521488 291 ntBASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
NUCKS1Q9H1E3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 MIR935-201ENST00000401179 91 ntBASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NUCKS1Q9H1E3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
NUCKS1Q9H1E3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.69■■□□□ 1.22
NUCKS1Q9H1E3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.69■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms