Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 AF201337.1-201ENST00000520239 748 ntBASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 AC120498.10-201ENST00000621827 505 ntBASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 AC068338.2-201ENST00000563278 1430 ntBASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.04■■□□□ 1.28
TRAIPQ9BWF2 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 KRT16P2-201ENST00000414673 1423 ntBASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 AC073210.2-201ENST00000430369 194 ntBASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TRAIPQ9BWF2 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 AC092053.2-201ENST00000640557 1818 ntBASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAIPQ9BWF2 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAIPQ9BWF2 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 SLC29A4P1-201ENST00000398760 971 ntBASIC23■■□□□ 1.27
TRAIPQ9BWF2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23■■□□□ 1.27
TRAIPQ9BWF2 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23■■□□□ 1.27
TRAIPQ9BWF2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 AC003102.1-202ENST00000563394 1796 ntBASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 BET1L-204ENST00000410108 637 ntTSL 3 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.99■■□□□ 1.27
TRAIPQ9BWF2 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 AL138781.1-201ENST00000566567 1274 ntBASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 AL162412.1-201ENST00000567129 965 ntBASIC22.98■■□□□ 1.27
TRAIPQ9BWF2 AC105036.2-201ENST00000569468 176 ntBASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms