Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNRNP40Q96DI7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 UBE2SP1-201ENST00000450587 669 ntBASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 KRT17P1-201ENST00000399211 1546 ntBASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.98■□□□□ 0.63
SNRNP40Q96DI7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 AL355472.2-201ENST00000422958 438 ntBASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SNRNP40Q96DI7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 AC008403.3-201ENST00000598924 454 ntBASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 AL359736.2-201ENST00000621992 437 ntBASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 AC087742.1-201ENST00000575880 1738 ntBASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNRNP40Q96DI7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNRNP40Q96DI7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 AC060766.5-201ENST00000590539 871 ntBASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.94■□□□□ 0.62
SNRNP40Q96DI7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 HLA-B-256ENST00000639848 1089 ntBASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SNRNP40Q96DI7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms