Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP54Q7Z3B4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 FBXW4P1-201ENST00000426721 2239 ntBASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.44■□□□□ 0.7
NUP54Q7Z3B4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 AP001160.3-201ENST00000601484 763 ntBASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.43■□□□□ 0.7
NUP54Q7Z3B4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 AC010141.2-201ENST00000452426 721 ntBASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 AC022517.1-201ENST00000592429 346 ntBASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.42■□□□□ 0.7
NUP54Q7Z3B4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 AC008175.2-201ENST00000612840 297 ntBASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP54Q7Z3B4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 KRT18P20-201ENST00000548986 1279 ntBASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 AC137761.2-201ENST00000561729 223 ntBASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 AC145350.3-201ENST00000569033 163 ntBASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
NUP54Q7Z3B4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NUP54Q7Z3B4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
NUP54Q7Z3B4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 POU5F1P4-201ENST00000413175 1085 ntBASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms