Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
RFX4Q33E94 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.5■□□□□ 0.71
RFX4Q33E94 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX4Q33E94 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX4Q33E94 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 AC006128.1-201ENST00000624704 1661 ntBASIC19.49■□□□□ 0.71
RFX4Q33E94 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX4Q33E94 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
RFX4Q33E94 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX4Q33E94 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
RFX4Q33E94 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX4Q33E94 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
RFX4Q33E94 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX4Q33E94 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RFX4Q33E94 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
RFX4Q33E94 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.48■□□□□ 0.71
RFX4Q33E94 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
RFX4Q33E94 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.48■□□□□ 0.71
RFX4Q33E94 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.48■□□□□ 0.71
RFX4Q33E94 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.48■□□□□ 0.71
RFX4Q33E94 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.48■□□□□ 0.71
RFX4Q33E94 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
RFX4Q33E94 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
RFX4Q33E94 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX4Q33E94 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.47■□□□□ 0.71
RFX4Q33E94 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.47■□□□□ 0.71
RFX4Q33E94 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.47■□□□□ 0.71
RFX4Q33E94 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.47■□□□□ 0.71
RFX4Q33E94 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.47■□□□□ 0.71
RFX4Q33E94 AC068587.7-201ENST00000641602 218 ntBASIC19.47■□□□□ 0.71
RFX4Q33E94 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.47■□□□□ 0.71
RFX4Q33E94 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.47■□□□□ 0.71
RFX4Q33E94 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RFX4Q33E94 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX4Q33E94 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX4Q33E94 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX4Q33E94 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.46■□□□□ 0.71
RFX4Q33E94 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.46■□□□□ 0.71
RFX4Q33E94 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RFX4Q33E94 AL035685.1-201ENST00000636663 812 ntBASIC19.46■□□□□ 0.71
RFX4Q33E94 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
RFX4Q33E94 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX4Q33E94 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX4Q33E94 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.46■□□□□ 0.71
RFX4Q33E94 AC073314.1-201ENST00000568729 2216 ntBASIC19.45■□□□□ 0.7
RFX4Q33E94 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX4Q33E94 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX4Q33E94 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RFX4Q33E94 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.45■□□□□ 0.7
RFX4Q33E94 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX4Q33E94 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
RFX4Q33E94 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RFX4Q33E94 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.45■□□□□ 0.7
RFX4Q33E94 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RFX4Q33E94 MIR3181-201ENST00000578512 73 ntBASIC19.45■□□□□ 0.7
RFX4Q33E94 MIR3621-201ENST00000580529 85 ntBASIC19.45■□□□□ 0.7
RFX4Q33E94 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RFX4Q33E94 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.45■□□□□ 0.7
RFX4Q33E94 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.45■□□□□ 0.7
RFX4Q33E94 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms