Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.49■□□□□ 0.71
RNF4P78317 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
RNF4P78317 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.49■□□□□ 0.71
RNF4P78317 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.48■□□□□ 0.71
RNF4P78317 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
RNF4P78317 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.48■□□□□ 0.71
RNF4P78317 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.48■□□□□ 0.71
RNF4P78317 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.48■□□□□ 0.71
RNF4P78317 KRT16P2-201ENST00000414673 1423 ntBASIC19.48■□□□□ 0.71
RNF4P78317 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF4P78317 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
RNF4P78317 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.48■□□□□ 0.71
RNF4P78317 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.48■□□□□ 0.71
RNF4P78317 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
RNF4P78317 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF4P78317 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
RNF4P78317 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF4P78317 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
RNF4P78317 RARRES2P11-201ENST00000635158 484 ntBASIC19.47■□□□□ 0.71
RNF4P78317 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.47■□□□□ 0.71
RNF4P78317 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF4P78317 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
RNF4P78317 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 FBXW4P1-201ENST00000426721 2239 ntBASIC19.47■□□□□ 0.71
RNF4P78317 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF4P78317 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.46■□□□□ 0.71
RNF4P78317 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
RNF4P78317 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF4P78317 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF4P78317 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.46■□□□□ 0.71
RNF4P78317 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF4P78317 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF4P78317 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
RNF4P78317 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
RNF4P78317 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.46■□□□□ 0.71
RNF4P78317 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RNF4P78317 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
RNF4P78317 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF4P78317 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF4P78317 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RNF4P78317 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF4P78317 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.45■□□□□ 0.7
RNF4P78317 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.45■□□□□ 0.7
RNF4P78317 AC073111.5-205ENST00000641717 521 ntBASIC19.45■□□□□ 0.7
RNF4P78317 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RNF4P78317 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF4P78317 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF4P78317 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.44■□□□□ 0.7
RNF4P78317 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF4P78317 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.44■□□□□ 0.7
RNF4P78317 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.44■□□□□ 0.7
RNF4P78317 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RNF4P78317 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF4P78317 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF4P78317 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF4P78317 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
RNF4P78317 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF4P78317 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 1037.5 ms