Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC107956.1-201ENST00000494359 873 ntBASIC29.45■■■□□ 2.31
MSH6P52701 AL445228.2-201ENST00000605589 952 ntBASIC29.45■■■□□ 2.31
MSH6P52701 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
MSH6P52701 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
MSH6P52701 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH6P52701 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC29.44■■■□□ 2.3
MSH6P52701 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC29.44■■■□□ 2.3
MSH6P52701 OR2A1-AS1-207ENST00000486094 819 ntBASIC29.44■■■□□ 2.3
MSH6P52701 SLC29A4P2-201ENST00000504749 1089 ntBASIC29.44■■■□□ 2.3
MSH6P52701 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC29.44■■■□□ 2.3
MSH6P52701 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC29.44■■■□□ 2.3
MSH6P52701 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH6P52701 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH6P52701 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH6P52701 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH6P52701 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
MSH6P52701 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
MSH6P52701 PPOX-219ENST00000544598 813 ntTSL 2 BASIC29.43■■■□□ 2.3
MSH6P52701 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC29.43■■■□□ 2.3
MSH6P52701 AL589743.5-201ENST00000616611 1050 ntBASIC29.43■■■□□ 2.3
MSH6P52701 AC097493.4-201ENST00000641197 219 ntBASIC29.43■■■□□ 2.3
MSH6P52701 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
MSH6P52701 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
MSH6P52701 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MSH6P52701 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
MSH6P52701 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC29.42■■■□□ 2.3
MSH6P52701 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC29.42■■■□□ 2.3
MSH6P52701 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
MSH6P52701 DHDH-203ENST00000522614 776 ntTSL 5 BASIC29.42■■■□□ 2.3
MSH6P52701 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
MSH6P52701 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC29.42■■■□□ 2.3
MSH6P52701 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
MSH6P52701 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC29.42■■■□□ 2.3
MSH6P52701 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC29.42■■■□□ 2.3
MSH6P52701 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MSH6P52701 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
MSH6P52701 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH6P52701 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC29.41■■■□□ 2.3
MSH6P52701 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
MSH6P52701 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
MSH6P52701 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC29.41■■■□□ 2.3
MSH6P52701 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
MSH6P52701 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC29.41■■■□□ 2.3
MSH6P52701 AC012306.2-201ENST00000609350 630 ntBASIC29.41■■■□□ 2.3
MSH6P52701 AC004812.2-201ENST00000611079 2094 ntBASIC29.41■■■□□ 2.3
MSH6P52701 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC29.41■■■□□ 2.3
MSH6P52701 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH6P52701 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH6P52701 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
MSH6P52701 ISG20-202ENST00000379224 540 ntTSL 3 BASIC29.4■■■□□ 2.3
MSH6P52701 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
MSH6P52701 LINC01124-201ENST00000409786 2117 ntBASIC29.4■■■□□ 2.3
MSH6P52701 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
MSH6P52701 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
MSH6P52701 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC29.4■■■□□ 2.3
MSH6P52701 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
MSH6P52701 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
MSH6P52701 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
MSH6P52701 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC29.39■■■□□ 2.3
MSH6P52701 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC29.39■■■□□ 2.3
MSH6P52701 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC29.39■■■□□ 2.3
MSH6P52701 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
MSH6P52701 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC29.39■■■□□ 2.3
MSH6P52701 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
MSH6P52701 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC29.39■■■□□ 2.3
MSH6P52701 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
MSH6P52701 POM121L13P-201ENST00000422362 380 ntBASIC29.39■■■□□ 2.29
MSH6P52701 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
MSH6P52701 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC29.39■■■□□ 2.29
MSH6P52701 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC29.39■■■□□ 2.29
MSH6P52701 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH6P52701 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
MSH6P52701 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC29.38■■■□□ 2.29
MSH6P52701 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
MSH6P52701 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH6P52701 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC29.38■■■□□ 2.29
MSH6P52701 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
MSH6P52701 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC29.38■■■□□ 2.29
MSH6P52701 AL049637.2-201ENST00000641778 930 ntBASIC29.38■■■□□ 2.29
MSH6P52701 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH6P52701 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC29.37■■■□□ 2.29
MSH6P52701 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC29.37■■■□□ 2.29
MSH6P52701 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC29.37■■■□□ 2.29
MSH6P52701 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC29.37■■■□□ 2.29
MSH6P52701 MIR4785-201ENST00000585005 73 ntBASIC29.37■■■□□ 2.29
MSH6P52701 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH6P52701 AC061975.6-201ENST00000579045 1553 ntBASIC29.37■■■□□ 2.29
MSH6P52701 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH6P52701 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms