Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.2■■□□□ 1.3
CLCN3P51790 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.2■■□□□ 1.3
CLCN3P51790 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.2■■□□□ 1.3
CLCN3P51790 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.2■■□□□ 1.3
CLCN3P51790 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.2■■□□□ 1.3
CLCN3P51790 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.2■■□□□ 1.3
CLCN3P51790 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLCN3P51790 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCN3P51790 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
CLCN3P51790 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.19■■□□□ 1.3
CLCN3P51790 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CLCN3P51790 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCN3P51790 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.19■■□□□ 1.3
CLCN3P51790 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.19■■□□□ 1.3
CLCN3P51790 AC098934.4-201ENST00000564127 592 ntBASIC23.19■■□□□ 1.3
CLCN3P51790 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.19■■□□□ 1.3
CLCN3P51790 AC016405.3-201ENST00000607710 860 ntBASIC23.19■■□□□ 1.3
CLCN3P51790 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.19■■□□□ 1.3
CLCN3P51790 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCN3P51790 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCN3P51790 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CLCN3P51790 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.19■■□□□ 1.3
CLCN3P51790 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.18■■□□□ 1.3
CLCN3P51790 AC093787.1-201ENST00000450396 207 ntBASIC23.18■■□□□ 1.3
CLCN3P51790 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
CLCN3P51790 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.18■■□□□ 1.3
CLCN3P51790 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.18■■□□□ 1.3
CLCN3P51790 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.18■■□□□ 1.3
CLCN3P51790 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLCN3P51790 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CLCN3P51790 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.17■■□□□ 1.3
CLCN3P51790 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CLCN3P51790 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.17■■□□□ 1.3
CLCN3P51790 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.17■■□□□ 1.3
CLCN3P51790 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.17■■□□□ 1.3
CLCN3P51790 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLCN3P51790 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.16■■□□□ 1.3
CLCN3P51790 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CLCN3P51790 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.16■■□□□ 1.3
CLCN3P51790 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.16■■□□□ 1.3
CLCN3P51790 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.16■■□□□ 1.3
CLCN3P51790 AC243732.1-201ENST00000612648 864 ntBASIC23.16■■□□□ 1.3
CLCN3P51790 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLCN3P51790 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.16■■□□□ 1.3
CLCN3P51790 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.16■■□□□ 1.3
CLCN3P51790 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.15■■□□□ 1.3
CLCN3P51790 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.15■■□□□ 1.3
CLCN3P51790 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.15■■□□□ 1.3
CLCN3P51790 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CLCN3P51790 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.15■■□□□ 1.3
CLCN3P51790 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.15■■□□□ 1.3
CLCN3P51790 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 AC069236.1-201ENST00000604339 616 ntBASIC23.15■■□□□ 1.3
CLCN3P51790 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.15■■□□□ 1.3
CLCN3P51790 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.15■■□□□ 1.3
CLCN3P51790 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLCN3P51790 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.15■■□□□ 1.3
CLCN3P51790 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.15■■□□□ 1.3
CLCN3P51790 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CLCN3P51790 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.3
CLCN3P51790 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CLCN3P51790 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CLCN3P51790 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
CLCN3P51790 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms