Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.73■□□□□ 0.75
SOX3P41225 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.73■□□□□ 0.75
SOX3P41225 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
SOX3P41225 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.73■□□□□ 0.75
SOX3P41225 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SOX3P41225 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX3P41225 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX3P41225 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.72■□□□□ 0.75
SOX3P41225 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.72■□□□□ 0.75
SOX3P41225 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX3P41225 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SOX3P41225 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SOX3P41225 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX3P41225 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX3P41225 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
SOX3P41225 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.71■□□□□ 0.75
SOX3P41225 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.71■□□□□ 0.75
SOX3P41225 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 KRT87P-202ENST00000534226 1464 ntBASIC19.71■□□□□ 0.75
SOX3P41225 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 AP006587.3-201ENST00000525742 1516 ntBASIC19.71■□□□□ 0.75
SOX3P41225 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.71■□□□□ 0.75
SOX3P41225 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.71■□□□□ 0.75
SOX3P41225 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SOX3P41225 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.7■□□□□ 0.74
SOX3P41225 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.7■□□□□ 0.74
SOX3P41225 AC092437.1-201ENST00000624794 1048 ntBASIC19.7■□□□□ 0.74
SOX3P41225 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX3P41225 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX3P41225 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX3P41225 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX3P41225 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SOX3P41225 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.69■□□□□ 0.74
SOX3P41225 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.69■□□□□ 0.74
SOX3P41225 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.69■□□□□ 0.74
SOX3P41225 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.69■□□□□ 0.74
SOX3P41225 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 AL137784.2-201ENST00000607332 1000 ntBASIC19.69■□□□□ 0.74
SOX3P41225 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX3P41225 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX3P41225 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX3P41225 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX3P41225 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX3P41225 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SOX3P41225 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SOX3P41225 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX3P41225 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX3P41225 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX3P41225 KRT19P1-201ENST00000405746 1186 ntBASIC19.68■□□□□ 0.74
SOX3P41225 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.68■□□□□ 0.74
SOX3P41225 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX3P41225 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms