Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH3P20585 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
MSH3P20585 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
MSH3P20585 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH3P20585 KRT19P1-201ENST00000405746 1186 ntBASIC20.91■□□□□ 0.94
MSH3P20585 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH3P20585 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.91■□□□□ 0.94
MSH3P20585 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.91■□□□□ 0.94
MSH3P20585 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
MSH3P20585 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSH3P20585 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH3P20585 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH3P20585 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH3P20585 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
MSH3P20585 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.9■□□□□ 0.94
MSH3P20585 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.9■□□□□ 0.94
MSH3P20585 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSH3P20585 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH3P20585 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
MSH3P20585 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.89■□□□□ 0.94
MSH3P20585 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.89■□□□□ 0.94
MSH3P20585 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSH3P20585 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.89■□□□□ 0.93
MSH3P20585 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.89■□□□□ 0.93
MSH3P20585 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
MSH3P20585 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.89■□□□□ 0.93
MSH3P20585 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.89■□□□□ 0.93
MSH3P20585 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSH3P20585 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH3P20585 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 AC138907.5-202ENST00000569484 235 ntBASIC20.88■□□□□ 0.93
MSH3P20585 KRT18P61-201ENST00000585825 1298 ntBASIC20.88■□□□□ 0.93
MSH3P20585 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSH3P20585 AC244015.2-201ENST00000616358 1861 ntBASIC20.88■□□□□ 0.93
MSH3P20585 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.88■□□□□ 0.93
MSH3P20585 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
MSH3P20585 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH3P20585 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH3P20585 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH3P20585 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.87■□□□□ 0.93
MSH3P20585 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 AP001160.3-201ENST00000601484 763 ntBASIC20.87■□□□□ 0.93
MSH3P20585 AC008175.2-201ENST00000612840 297 ntBASIC20.87■□□□□ 0.93
MSH3P20585 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH3P20585 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.87■□□□□ 0.93
MSH3P20585 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSH3P20585 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.86■□□□□ 0.93
MSH3P20585 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.86■□□□□ 0.93
MSH3P20585 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH3P20585 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH3P20585 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH3P20585 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.86■□□□□ 0.93
MSH3P20585 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH3P20585 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.86■□□□□ 0.93
MSH3P20585 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH3P20585 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH3P20585 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.86■□□□□ 0.93
MSH3P20585 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSH3P20585 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH3P20585 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MSH3P20585 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH3P20585 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms