Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
VIMP08670 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VIMP08670 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VIMP08670 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VIMP08670 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.07■□□□□ 0.96
VIMP08670 KRT18P60-201ENST00000312876 1297 ntBASIC21.07■□□□□ 0.96
VIMP08670 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.07■□□□□ 0.96
VIMP08670 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.07■□□□□ 0.96
VIMP08670 BHLHE23-202ENST00000612929 1109 ntBASIC21.07■□□□□ 0.96
VIMP08670 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.07■□□□□ 0.96
VIMP08670 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.07■□□□□ 0.96
VIMP08670 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.07■□□□□ 0.96
VIMP08670 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VIMP08670 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VIMP08670 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VIMP08670 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.06■□□□□ 0.96
VIMP08670 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VIMP08670 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VIMP08670 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VIMP08670 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VIMP08670 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VIMP08670 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.05■□□□□ 0.96
VIMP08670 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
VIMP08670 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.05■□□□□ 0.96
VIMP08670 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
VIMP08670 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VIMP08670 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.04■□□□□ 0.96
VIMP08670 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VIMP08670 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
VIMP08670 AC074183.2-201ENST00000623112 922 ntBASIC21.04■□□□□ 0.96
VIMP08670 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.04■□□□□ 0.96
VIMP08670 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.04■□□□□ 0.96
VIMP08670 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.04■□□□□ 0.96
VIMP08670 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.04■□□□□ 0.96
VIMP08670 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VIMP08670 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.03■□□□□ 0.96
VIMP08670 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.03■□□□□ 0.96
VIMP08670 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VIMP08670 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
VIMP08670 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
VIMP08670 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.02■□□□□ 0.96
VIMP08670 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
VIMP08670 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
VIMP08670 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VIMP08670 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
VIMP08670 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VIMP08670 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.02■□□□□ 0.95
VIMP08670 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VIMP08670 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
VIMP08670 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.01■□□□□ 0.95
VIMP08670 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VIMP08670 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VIMP08670 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.01■□□□□ 0.95
VIMP08670 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.01■□□□□ 0.95
VIMP08670 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.01■□□□□ 0.95
VIMP08670 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.01■□□□□ 0.95
VIMP08670 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VIMP08670 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VIMP08670 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.01■□□□□ 0.95
VIMP08670 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.01■□□□□ 0.95
VIMP08670 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms